Input parameters:

  Query = FBpp0078164 (Len=1429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0078164, Len=1429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYYPVGWPKRVGLALPGESASIRHICCDAVKILVAAVGDDFLGIWYANPLIPIAYFRRTEDSLRQYGANQLIVWKPDSRQ 80  
WD40-rpts                                                    (_____________________WD 1________

Query       81 LALLTASGSLLLYQLDFEANGMGILQQIDPPAASLKRDSAELFIKENIPRLSLRELCSVTLGSVITTVCCISLSELLLAT 160 
WD40-rpts      _____________)                                                                  

Query      161 QSCELLRLQWTELEHAENDLELPALSSIKLRDIPFYVQQQPQQSARNVPPLNRDSYVASLEYSPFIGGCAAVFSDRRAAF 240 
WD40-rpts                                                                                (_____

Query      241 LIANHLRFETDHMHGFWVPDVEDASVCSVNHKFRLLAYGQESSAVKVYAIDDATGGLEFSHRLILTENILPDSLGSVNEL 320 
WD40-rpts      ____________________WD 2________________________)                (______________

Query      321 KWSPDGCVLAVSWTNGGLSLWSTFGALLMSTLSWDFGLNVDLVCQNPLKIRRLEWSTEGYQLFMLKLHPEKDKSNVLQLQ 400 
WD40-rpts      __WD 3_______________)                                                          

Query      401 FVKSALSMNPCMTTSPHILLQGDDCLYLNQGNNLELTYAGSHGTFPSSGLGSDEDISGDGDCLELKQSPHTGSILTESKY 480 
WD40-rpts                                                                                      

Query      481 WTVLQLPLNYAATNWPIRYAAIDPDGLHLAVAGRTGLAHYSLVTRRWKLFGNESQEKDFVVSGGLLWWHGFVVMGCYSLL 560 
WD40-rpts                                                                                      

Query      561 DRTDELRCYPADCKLDNQYGHKLQVRAPVISLNSFRHQLIVLTADGIVSLFNMSKNSAYALDIECAYELDVKSICIHPAC 640 
WD40-rpts                                                                                      

Query      641 IVSLTVTNLKNELKPQGQLGGDQAETIIVNVCGRILMIQRDAGEQVPNTLLATCLASCVEVFWLSHSLERCAMRDCLWLY 720 
WD40-rpts                                                                                      

Query      721 SGAHGMRVWLPILPPGRERREGEQGGAQRLHSFMSKRIMLSFPLKLYPLVVLFDNVIVLGVENESTLYANEQVSHFSLPF 800 
WD40-rpts                                                                                      

Query      801 AVMERKSQIYLHKVLRQLIKRNLGYSAWEMAQSCCSLPYFPHALELLLHEVLEEEATSKQPIPDAQLPSILDFIREFPVY 880 
WD40-rpts                                                                                      

Query      881 LETIVQCARKTEIALWPYLFSMAGKPKDLFQMCLQSEQLDTAASYLIILQNLEPSVVSKQYATMLLDIALQQRKWELAKD 960 
WD40-rpts                                                                                      

Query      961 LIRFLKAIDPNEIDSPRSSMVVNVKIAPPPQVNTQQQVNQNADAFNMVLGPIARERSFSTTVTSNLPKDKQASGTPGVAP 1040
WD40-rpts                                                                                      

Query     1041 VTESSSAGAPSVVRRRSTKQRETFCIDLILQRHARQLLQNHKLMDLGYMCAYLDFHLVSWLSQESERAAKLDDFAGALQA 1120
WD40-rpts                                                                                      

Query     1121 LHEELDLPIPFPTAAKDDFAQIRGSLRQTGGGGSSQTSESGYFSLATPNGAATQSPQLQPSIREEEEELQQPSSLPILKT 1200
WD40-rpts                                                                                      

Query     1201 RSGSQLSFDNFRYRRLYSLPTSEDDLAVDILPQKLSIKLRYLLQLFIEANCTDYALVLSILLQDAASISRIVNGIIRSES 1280
WD40-rpts                                                                                      

Query     1281 VHTCRRTESALKQLSQSTFEHSGSLYRGFVLTLQPHVYLLEQYIQSLGDAPCSQLQDAGPGTEQGVDVSTGLQGLQNEVG 1360
WD40-rpts                                                                                      

Query     1361 EFVPNSQQANGNQWTVADLNPNHQRLTRHASLESNGNAVVASGSSAHSTPTQRQLSRQNSREREGCRLM 1429
WD40-rpts                                                                           

3 WD40-repeats found in QUERY=FBpp0078164 (Len=1429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    47-94       4.11  284.53  0.00908       10.0%     45.40
  WD 2:  Seg 15   235-289      2.77  229.14  0.04966       17.5%     54.78
  WD 3:  Seg 20   306-342      5.23  330.64  0.00218       25.0%     43.12

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-94     ANPLIPIAYFRR---------------TEDSLRQYGANQLIVWKPDSRQLALLTASGSLLLYQ
   WD 2  235-289    DRRAAFLIANHLRFETDHMHGFWVPDVED--------ASVCSVNHKFRLLAYGQESSAVKVYA
   WD 3  306-342    TEN---ILPDSL---------------GS--------VNELKWSPDGCVLAVSWTNGGLSLWS

   WD40 Template    TGECLRTLSGHT---------------SG--------VTSVSFSPDGKRLVSGSEDGTIKVWD