WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0077913 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0077913 (Len=1959) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0077913, Len=1959): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MVDLLFLQLRKVPTKEDEATTTTSAIKQQIKRRISFSGKKSVREFVNTKETNNWDDSYEVSEHHAEDSSGSKCCSTGSAS 80
WD40-rpts
Query 81 VARVSEHADKENIPLPSHCEREHVDLSVNLQASVDFTLLPCEMMDKSRKTSSISAVSFCMTSEERKLLQSSLSDRQLVDK 160
WD40-rpts (________________________________WD 1____
Query 161 TMDLISGSLVNRHQIASSVCEESSIKVATNKLEKVVFTPAVKAVSDSFMDITPLGFTDPNPAAPAPAPVATLYPPTQQSL 240
WD40-rpts ____________________________)
Query 241 MELEEDSIVREMRESTKNQTKTPAQKSLFMDVGETKNKTQQGAGGASFSLNVSNNRDRSPSNSFESLNSTMNFTRDESML 320
WD40-rpts
Query 321 IPFDMISGKNISKKLNFRQLNEDLETGKIQIFPNGPKTPTTDRKAKKNRFWCGLEEESAGDNSPKKDIRSIVPRGMLNFS 400
WD40-rpts
Query 401 ENMTLTPTKTSPVGKNKEKLKAADEKQKYRLSQADEMMLDNTNFLAHARLGDETQSRNTSKNSTRRETTCETSELNLEYP 480
WD40-rpts
Query 481 TLSQDFQPIPSSKTRKTDFMAEEMQLSQTNYPAIPALKTATSRRTLHLNESMDHETTKSTYVRKEISVTTQETIYEKSTT 560
WD40-rpts
Query 561 NEQNSNQNRNTWACTKTKRRATLLMQESMEEDIISPLKNLQLKPNAAPMNTGQSKVNHTLYLAEPLEEVDINQSNMLPTK 640
WD40-rpts
Query 641 NVAPREQLKARKTLLLEEPMEEEMSSNIGYNSKRKTLHLAEPLVVEGEDFILEKHIPIKVVAHQENKSKGRQTLLFEEPV 720
WD40-rpts
Query 721 EEEIFHNAKDLPECALKGNKTGPQKYSQLNQGKSFTSQSRSKARQTLLIEEPMEEDTEFNNKYNIAKPGENHIRKIAKSR 800
WD40-rpts
Query 801 QTLLLSEPLEEEMCLPPPKNKSIVSQKTIDKSTEQQRSKSRHTLLLSEPIEEEHIQQDLPAEKEDSLARQQRFKPRQTLI 880
WD40-rpts
Query 881 MAEPIEEDVGETERRVQTNITGSSTSRPRHTLLMSEPIEEELTNEDKSTNASTNRTLRSRRTILMAEPIEEEGNKSIAEK 960
WD40-rpts
Query 961 IGQFTKESSEEAVFQTSKSRQTLLMAEPIEEDVFNQSNDQPKPLPISKDKITRKTSRRHTLITAEPIEEDLSVRKPLENS 1040
WD40-rpts
Query 1041 KESSLTARIIQSFAEPIENALFSITDQIAKQQFSESVQTPPKEPLNYLHQKPRNTLISHETIQEDLEPVNENSSVGPLRS 1120
WD40-rpts
Query 1121 RYRKTLIMAEPIEEDVNNHNMTKQNGICDSLNVPQSGGYMAAKTRQSVHIPVPIEEDHIPGQQQRESEPAVKGRTTLLTE 1200
WD40-rpts
Query 1201 SIEEDVPAQHTRISKNKSMGSKVSAEPIIEDLDSNRPEISQSVEETLPQRSQVPDVPSSRRHTLLLSEPMEEDEGIFGHN 1280
WD40-rpts
Query 1281 YPIRTKHQISEKLEKPEGPIHSSKNSVENEEIGTPPSAKTQQSIAMSESMDFQSPQFRPRGPDFNAITPGMSLTEFVDQE 1360
WD40-rpts
Query 1361 EMCKTPIHKRVLLTSHRKKLSMYQPVPIDLEANASGFGTPKNLVQLKRLPTHLTPNLPESKKRNTHLFPNSNMDIELEED 1440
WD40-rpts
Query 1441 QEGSWGTKSIQMHTGTSKSRRTYTVDQLDASVQPVRDYNPVVTEMNKQGGLNMLELPRKSTYNMDLEEKPITISDVNNYF 1520
WD40-rpts
Query 1521 HEQKEQQRQSSERESGSSNDRTFKSYAATISKFINLTGNTTIFAAAEDLGGEGKDQPHQIDNEHLSLVSTLAEETDDDGD 1600
WD40-rpts
Query 1601 EKEEEEEQKQKQHLLQPEICEAQLNSMVKAGSEGSCKKCRNCNHTLSETRLSSESFVLPPRKLWDFSRLQQRLRNIRQRP 1680
WD40-rpts
Query 1681 SWKEVNTYWEIEEEARLSRNQDSDDSMEQTRVEEEATKWNKAALLEMCKLRTEEKDIAMPPESFFTRLKRLLTEQQPNWI 1760
WD40-rpts
Query 1761 FDYQRKVSQQMIFYNRQLTTIRIVVNYQIEDLVEESTISVCSIQLDNDVPTPKDQWSSREHFLNFHLSLRLPMNPSDEIE 1840
WD40-rpts
Query 1841 GSDETAFLKFLNGIDRRIAEVKQKLHKVLDLLAQKRARLTREANRTIVRKIVRKCIDQEPIVRLEKITFLIEIGNIEDVS 1920
WD40-rpts
Query 1921 FTDILRPELHLFNENIQYLPKGIPFLEAFLTDPEQYLRK 1959
WD40-rpts
 1 WD40-repeats found in QUERY=FBpp0077913 (Len=1959): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 120-189 3.76 270.16 0.01415 35.0% 15.09Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 120-189 PCEMMDK-SRKTSSISAVSFCMTSEERKLLQSSLSDRQLVDKTMDLISGSLVNRHQIASSVCEESSIKVAT WD40 Template TGECLRTLSGHTSGVTSVSFSPD---------GKR----------LVSGSEDG------------TIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |