Input parameters:
Query = FBpp0077779 (Len=81)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0077779, Len=81):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIC 80
WD40-rpts (________________WD 1_______________) (________________WD 2_______________
Query 81 E 81
WD40-rpts )
2 WD40-repeats found in QUERY=FBpp0077779 (Len=81):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-37 6.19 370.38 0.00063 5.0% 16.48
WD 2: Seg 2 45-81 5.07 324.20 0.00266 25.0% 32.44
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-37 MGT---KRPNNSVILAQEAKRSKNDLMAYTNRDKALLESG
WD 2 45-81 -QAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIC--E
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD