WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: FBpp0077779    [Drosophila melanogaster]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = FBpp0077779 (Len=81)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077779, Len=81):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIC 80  
WD40-rpts      (________________WD 1_______________)       (________________WD 2_______________

Query       81 E 81  
WD40-rpts      )



2 WD40-repeats found in QUERY=FBpp0077779 (Len=81):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       6.19  370.38  0.00063        5.0%     16.48
  WD 2:  Seg  2    45-81       5.07  324.20  0.00266       25.0%     32.44
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-37     MGT---KRPNNSVILAQEAKRSKNDLMAYTNRDKALLESG
   WD 2   45-81     -QAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIC--E

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019