Input parameters:

  Query = FBpp0077488 (Len=1508)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0077488, Len=1508):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAPDVGRIIRAPARRKRNDEQLMDRIKLKKVLGLTVCSNAALDVSPVSGLLAYPAGCTVVLFNAKRQTQAYLVNTSRKA 80  
WD40-rpts                                                                         (____________

Query       81 FTSVAFSRCGRYVATGECGINPAIKVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSVGSQHDMIVNV 160 
WD40-rpts      ______WD 1_________________)             (__________________WD 2________________

Query      161 FDWRANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLEGGRKYKDPIPLMGRSAILGDLRDNDFCAVACGKGIC 240 
WD40-rpts      _)  (________________WD 3________________)      (___________________WD 4________

Query      241 AESTYAITRQGHLVEFSSRRLLDKWVQCRTTNANCICVNERFILVGCAESIIRIFNSATLEYVTTLPRTHYLGVDVAQGI 320 
WD40-rpts      ___________)    (_________________WD 5_________________)         (______________

Query      321 QINHIMSVPQQAKFPDCIAMVFDEQRSKVSCVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREPSQTL 400 
WD40-rpts      ____________WD 6_________________________)(_________________________WD 7________

Query      401 PEECFVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQFIKDQGSSLFDKAGNSSYDGRNGVRCIKISPE 480 
WD40-rpts      _________________)                                  (____________________WD 8___

Query      481 LQHLASGDRCGNIRVYSLVNLRLLTTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLDDHSSSI 560 
WD40-rpts      ________________)   (__________________WD 9__________________)(_________________

Query      561 TSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKTTLYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTF 640 
WD40-rpts      ___WD10___________________)(___________________WD11__________________)   (______

Query      641 KGSHSDEGSLIKLSLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHLISASGDGCIFIWQVPH 720 
WD40-rpts      ____________WD12__________________)   (_________________WD13________________)   

Query      721 DMIVTMQARMSQQRLRSGHAPLPRPLAPISPPDGIVLESPTSEIEQPQLQPKFGVAERFSDVGQLPQWAMRKAAADSDSG 800 
WD40-rpts               (__________________WD14_________________)                              

Query      801 ALSIPTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRSTQLETADDLRSNSESPLGTVSSVGGHSGVNV 880 
WD40-rpts              (_________________WD15________________)(_______________WD16_____________

Query      881 QTSDYNSASSKDITYNQTYLSEDSSIDSGMETRRGELKFIGSSNNGTVVTVSSVSSIAVSASNGAMSTGSGAAQQRLQLP 960 
WD40-rpts      _)          (_________________WD17________________)                             

Query      961 DKRLKPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNNLAPSTPTDFKVTAMNEDELRKSVRRQKFEKSGLQLTPSAL 1040
WD40-rpts                                                                                      

Query     1041 SGNGSSHTASTGTGTSDTEDEGSTPSAENAERSLASTLGGSSENLPQSSTNSFLHAALPEGPGLTTPMERGGSSRRSISA 1120
WD40-rpts                                                                                      

Query     1121 KHNTENGKSVAAPPTITKSYTSTKKEELLQVINKVKQQLENVGHRPLRGSHSISDLSLAANLDGSRNAGGGPGRYQKPGN 1200
WD40-rpts                                                                                      

Query     1201 PKTLNPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQKPQVQHRNGNVSRSASKRNSLQGKTGLGASSNSMNVLNQG 1280
WD40-rpts                                                                                      

Query     1281 SDSEPEDSNRLRSASNGQGRSNGPIAANRQYSNKINNVNNNRRKTPNFSSATPMQDDSSSEETPNSTVNNKPIVPPRPRN 1360
WD40-rpts                                                                                      

Query     1361 LAFDHKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEAQVHNVINKLYTTTQAAMQLHANLKNTLLLKELENALIMSR 1440
WD40-rpts                                                                                      

Query     1441 NMLSSITNRQADKTNNGGGGLGVGGSGGLNHDQLNADNGDYLMMVNNCADLLSNLRTKHKPDDCENNS 1508
WD40-rpts                                                                          

17 WD40-repeats found in QUERY=FBpp0077488 (Len=1508):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    68-108      6.49  382.87  0.00043       27.5%     57.65
  WD 2:  Seg 10   122-162      7.25  414.26  0.00016       40.0%     54.88
  WD 3:  Seg 14   165-202      5.57  344.76  0.00141       25.0%     52.92
  WD 4:  Seg 18   209-252      3.10  242.65  0.03292       12.5%     23.02
  WD 5:  Seg 22   257-296      6.83  396.96  0.00028        7.5%     48.53
  WD 6:  Seg 27   306-362      5.07  324.01  0.00267       10.0%     45.50
  WD 7:  Seg 30   363-418      5.58  345.22  0.00138       27.5%     47.97
  WD 8:  Seg 37   453-497      7.51  424.71  0.00012       30.0%     49.63
  WD 9:  Seg 41   501-542      7.29  415.76  0.00016       35.0%     57.16
  WD10:  Seg 45   543-587      6.98  403.05  0.00023       30.0%     52.61
  WD11:  Seg 49   588-630      6.48  382.18  0.00044       10.0%     58.08
  WD12:  Seg 53   634-675      6.88  398.99  0.00026       25.0%     56.71
  WD13:  Seg 57   679-717      9.42  503.92  1.0e-05       37.5%     57.95
  WD14:  Seg 62   730-770      5.18  328.76  0.00231       22.5%     22.72
  WD15:  Seg 67   809-847      3.30  250.95  0.02555        7.5%     46.98
  WD16:  Seg 71   848-882      3.92  276.52  0.01163       22.5%     38.68
  WD17:  Seg 74   893-931      3.45  257.07  0.02117       17.5%     46.51

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   68-108    -QT-----------------QA-----Y-----LVNTSRK---AFTSVA-----FSR-----------CG---R--YVATGECGINPAIKVWE
   WD 2  122-162    -GS-----------------VV-----A-----EFVDHKY---AVTCVA-----FSP-----------TG---K--YLVSVGSQHDMIVNVFD
   WD 3  165-202    -AN-----------------LK-----M-----ASNKISS---KVAAVC-----FSE-----------DG---S--YFVTVG---NRHVKYWY
   WD 4  209-252    -YK-----------------DP-----I-----PLMGRSA---ILGDLRDNDFCAVA-----------CG---K--GICAES--TYAITRQGH
   WD 5  257-296    SSR-----------------RL-----L-----DKWVQCR---TTNANC-----ICV-----------NE---R--FILVGC--AESIIRIFN
   WD 6  306-362    LPRTHYLGVDVAQGIQINHIMS-----V-----PQQAKFP---DCIAMV-----FDE-----------QR---S--KVSCVY--NDHSLYIWD
   WD 7  363-418    LRD-----------------IS-----RVGKSHSFLYHST---CIWGVE-----TVPYNVEREPSQTLPE---E--CFVTCS--SDDTIRVWG
   WD 8  453-497    QGS-----------------SLFDKAGN-----SSYDGRN---GVRCIK-----ISP-----------EL---Q--HLASGD--RCGNIRVYS
   WD 9  501-542    -LR-----------------LL-----T-----TIEAHES---EVLCLE-----YSN-----------EKIERK--LLASAS--RDRLIHVFD
   WD10  543-587    VAQ--------------NYLLL-----Q-----TLDDHSS---SITSIK-----FVG-----------AG---LNFQMISCG--ADKSIMFRS
   WD11  588-630    FQG--------------NIFMR-----G-----TNTSGKT---TLYDME-----VDS-----------NA---K--HILTAC--QDRNVRVYG
   WD12  634-675    -AK-----------------QT-----K-----TFKGSHSDEGSLIKLS-----LDP-----------SG---I--YVATSC--TDKTLAVYD
   WD13  679-717    -NE-----------------CM-----A-----RMYGHSE---LVTGLK-----FTN-----------DC---R--HLISAS--GDGCIFIWQ
   WD14  730-770    MSQ------------------Q-----R-----LRSGHAP---LPRPLA---PISPP-----------DG---I--VLESPT--SEIEQPQLQ
   WD15  809-847    -GG-----------------SA-----T-----VPGMHAA---SSMGNL-----SSS-----------PS---Q--QMTGLA--PRARGRWAQ
   WD16  848-882    RST-----------------QL--------------ETAD---DLRSNS-----ESP-----------LG---T--VSSVGG--HSG-VNVQT
   WD17  893-931    -IT-----------------YN-----Q-----TYLSEDS---SIDSGM-----ETR-----------RG---E--LKFIGS--SNNGTVVTV

   WD40 Template    TGE-----------------CL-----R-----TLSGHTS---GVTSVS-----FSP-----------DG---K--RLVSGS--EDGTIKVWD