Input parameters:

  Query = FBpp0076513 (Len=1132)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076513, Len=1132):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTTDIEVPGKSEIDGDLEGLPIDSEVTDVAAPLSSRRSKPYFKKFKEPDSDEDVADPRQLFNVQESWRTLMSLSSCQKV 80  
WD40-rpts                                                                                      

Query       81 MVSEKAQKALKIEVGINVTQEFPWKQVQFKDLRDVLFDELENSAELMKKFKNFNPEHFILIGFCPLLTEQEDDPPEGEPF 160 
WD40-rpts                                                                                      

Query      161 IFYSSIKESKMAMSIIQNMEHFERWRMQRRLRKKPRRWVSHGTDEEMTIMVERFKDEPIDVEIQSVYPIQMPRHVAFDYR 240 
WD40-rpts                                                                                      

Query      241 MTRDVRDGVLELLPNENIKWENVTKKRVNVSVQSAPPKIEREQQTNPTFPSNAWSQYLYEIDDEDLELDETDVDEEEEKK 320 
WD40-rpts                                                                                      

Query      321 KAQAKPGTYVEPEKKPPEMSAQIEMLLNTLEFNQIDSYRDDYSLISSRQVVQYTNPYLQEFLCFANISKSNKRFVAGYDW 400 
WD40-rpts                                                                                      

Query      401 YPKLSGLIAVSYAFSTPATVNEATNRVDYVQRAVLEPNPVLLWSFSDNLNYKLEFEAPIETTALTFCPFNGDILLGGSKN 480 
WD40-rpts                                                  (___________________WD 1____________

Query      481 GQVVLWDLQGRCEKLDEEEYLTAAQAKYRIMIGEFLNWTIDIEDNVIVPATISLLDCSPKGAITAFYWLGRSIYLSQFGK 560 
WD40-rpts      ______)                                                                         

Query      561 VYNDPDIRNHHKFFVTCAFDGTISFWDLDGKGGKSAKDKMRNRMLPKELTQSESAFKSMVIKPTYNLYFPEPITGIIADT 640 
WD40-rpts                                                                                      

Query      641 SCLSCLTPVAKLIQANPSNYPIKTIAKDPPTMRQSMIVSTFYGHVSRIDWQGTYTEGEATEVINSSIPFAMVHDGPVVMV 720 
WD40-rpts                                                        (_______________________WD 2__

Query      721 KKNPFYPELFASIGRTILAIWKEDYNYSPIFWRKRACDLTAVAWSETRPAVLYLTRIDGILEAWDILARDDDACLTEILG 800 
WD40-rpts      _____________________)                                                          

Query      801 GGIITAITEHRPSLPHKILGIGDYNSSIRMVKLPHSFDVPLPNELDQLIKYVLKEERRKMGIQSWEQKYYELNKDIIEAK 880 
WD40-rpts                                                                                      

Query      881 REAAAEIRKEMEKKEKEEQLASRKKGQKSGEDGGEGGEEIKGKKNYSGLNYNEKMAVKWDELNLNRMMTILMSRKQMDPE 960 
WD40-rpts                                                                                      

Query      961 KLARETALEKERHAYEAAKKKSHLDILATVENDIANIRSRILPLELQDMQRSEMIAERVKREVENADSYEKVCEDAFEML 1040
WD40-rpts                                                                                      

Query     1041 NNFKEFEPIDYIEFLERGRKRRQLLDQSLGGNTDRLRWYEERVRLGELGECQFIYEPISGSQGEESSHPEFAAPQKIMSK 1120
WD40-rpts                                                                                      

Query     1121 SNSDIIVDDFEG 1132
WD40-rpts                  

2 WD40-repeats found in QUERY=FBpp0076513 (Len=1132):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   445-487      3.47  258.11  0.02051       27.5%     37.43
  WD 2:  Seg 19   691-742      2.97  237.27  0.03880       17.5%     36.79

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  445-487    FS------------DNLNYKLEFEAPIETTALTFCPFNGDILLGGSKNGQVVLWD
   WD 2  691-742    QGTYTEGEATEVINSSIPFAMVHDGP--VVMVKKNP-FYPELFASIGRTILAIWK

   WD40 Template    TG------------ECLRTLSGHTSG--VTSVSFSP-DGKRLVSGSEDGTIKVWD