Input parameters:

  Query = FBpp0076297 (Len=1211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076297, Len=1211):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDRNEEIEPCRSIGPHELDVVKSQAVIKLSPVPVPAHFKRLECNTNLNLPPLNWLTTSHSSHGLHQALYQSAGFASFRL 80  
WD40-rpts                                                                                      

Query       81 GQMFPDCVGEVDVVSDAENIKQLLKLPYSAKSAISMVVHKVGNTLLLDEFDIQKYLLRKADDDWKWLRSFILEHVLTYGD 160 
WD40-rpts                                                                                      

Query      161 TQHNYCLKERSREALQTKNLLSKFLYHSLKQTGDELDYDVANTPTQLTSRKQGLPITGPVLPEPKIEENVPDPKSSHAFN 240 
WD40-rpts                                                                                      

Query      241 RNVVWTFEDIRMLIGTDMPIFGGPNRPCISLRLRDAAQPINVLTGIDYWLDNLMCNVPEVVMCYHLDGIVQKYEIIKTED 320 
WD40-rpts                                                                        (_____________

Query      321 LPYLENSQFSPQVVRNVAQNILAFLKANATKAGHTYWLFKGRNDDVVKLYDLTTLCQSQASEKSDEDPPEQQVNPFTVPV 400 
WD40-rpts      _________________WD 1_____________________________)                             

Query      401 GMLLYSVARNMKNTLPHISPKAAGNIRALLDNCIKLLPKEQYPQIVSSSHYILSDLHVPAGIDPKAPKFEEVDSDDQSLY 480 
WD40-rpts                                                                                      

Query      481 DDDEEEDEEDYEDDVLDYSSEKSYQSSEQSGGKANVAVRHICDALRDFKSHAKKSKPAPLIATTAERCSFSLEHISAGLS 560 
WD40-rpts                                                                                      

Query      561 CLQYFNGSQEEKLKESETNAKQEEKRRILHEEQNPNMAKPCSAIPLPYEQLKVSQQPTQVVKKPNSKTQAKRSKSKELTT 640 
WD40-rpts                                                                                      

Query      641 TTKSKSANASNQQMSAKFNTQHFGSWNVHLKLLLLEKACLTFATLAEHYYESRRYGSTLRSIELACRCQQVLNKYMANVV 720 
WD40-rpts                                                                                      

Query      721 SQYSCLLGRAGDCFFQISKNWESIEEYIQQFGELDPSMDFIGDELAQELEGEEEELPSLAPSNNVEQVMLHSCKCYEQAL 800 
WD40-rpts                                                                                      

Query      801 EHAQKAESNELLRRLGNVRNELGLKYMYWAQEEYSELMKKKESTKDAGNDQTEDSPTADPSEPLYVKLTVNSYDCLRRGI 880 
WD40-rpts                                                                                      

Query      881 EAFTAVKDNVNLAFLYCNIGRFMRLRAHLIMPNESAITLESQKAFYNEAFSYYVKAKDCLDTRKANPELWDLVHWELSTA 960 
WD40-rpts                                                                                      

Query      961 TFTLAKQLQDHSAADKSSLVDASKEVLELLQKSLRLCDVEHPGARQVLYSFRSGLIHKRIASFHYSQLRSHGCCDFSQLP 1040
WD40-rpts                                                                                      

Query     1041 KSTLQLCKYHYEKATQILESLKEVGDLLVVQLERISLHEFLAELSTHTAQKIKQMQAALEICLQCHLIFAHVIDTNSGQV 1120
WD40-rpts                                                                                      

Query     1121 ADDEFAGHLTLFESRLQNALKTLTKLTLAGKDPKQLSKLYKRMYMETLTGKHGLGAQQSSTACLKHLHMLLARLRAMCET 1200
WD40-rpts                                                                                      

Query     1201 QLAPRPAVRVF 1211
WD40-rpts                 

1 WD40-repeats found in QUERY=FBpp0076297 (Len=1211):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   307-371      3.05  240.69  0.03496       20.0%     16.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  307-371    DGIVQKYEIIKTEDLPYLENSQFSPQVVRNVAQNILAFLKANATKAGHTYWLFKGRNDDVVKLYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-------------------------KRLVSGSEDGTIKVWD