Input parameters:

  Query = FBpp0075377 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0075377, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDNTPPHRPDFDDGDDELQEIIELEEQPLDEDDDDLEEVTLEQLEARLAMAGGDDDEEEDEEELRDRERIAAITDEATV 80  
WD40-rpts                              (_________________WD 1_________________)           (____

Query       81 TFKKHTAPVFACSLHPNYNWAVTGSEDDRAFVWETSTGDVLYEITEHKDTVTETHFSHDGVYLATGDLAGDLFVFKVSEK 160 
WD40-rpts      _____________WD 2________________)   (_________________WD 3________________)    

Query      161 HDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEVFVFRIPSGECKILPGQSSRCESGELSGDGKKLFTAYVNGSV 240 
WD40-rpts             (_______________WD 4_______________)  (_________________WD 5_____________

Query      241 KLWDLKSCQVLIDVNESHPMGFGEITHAVVACERESPFYVCAEASGKMLFCTNNGPVSTIQSEHGIECLAFAPSSADLKL 320 
WD40-rpts      ___)(________________WD 6________________)          (__________________WD 7_____

Query      321 FACGSLDGRISIWDYAKSALRTICENPVPNDAVIRIKWLNDHTILAATSQGNLNAFDARTGILKFTLTGHYYHIYEFVYK 400 
WD40-rpts      _____________)(___________________WD 8__________________)   (_________________WD

Query      401 PQENLLLTVSEDNTAKIFKVPALGD 425 
WD40-rpts       9________________)      

9 WD40-repeats found in QUERY=FBpp0075377 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-64       6.12  367.32  0.00070       17.5%     34.79
  WD 2:  Seg  5    76-114      9.36  501.35  1.1e-05       35.0%     51.92
  WD 3:  Seg  9   118-156      9.52  507.94  8.9e-06       32.5%     56.34
  WD 4:  Seg 13   168-203      7.35  418.13  0.00014       17.5%     48.48
  WD 5:  Seg 16   206-244      9.18  494.01  1.4e-05       32.5%     54.27
  WD 6:  Seg 20   245-282      4.94  318.93  0.00313       12.5%     39.63
  WD 7:  Seg 24   293-334      7.28  415.22  0.00016       32.5%     55.88
  WD 8:  Seg 28   335-377      5.62  346.79  0.00132       15.0%     49.68
  WD 9:  Seg 32   381-419      9.23  495.95  1.3e-05       30.0%     56.52

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-64     LEE------QPLDEDDDDLEEVTLEQ---LEARLAMAGGDDDEEEDEEE
   WD 2   76-114    -DE----ATVTFKKHTAPVFACSLHP---NYNWA--VTGSEDDRAFVWE
   WD 3  118-156    -GD----VLYEITEHKDTVTETHFSH---DGVYL--ATGDLAGDLFVFK
   WD 4  168-203    T--------KIWEYSMSDMSWLFWHR---AAHIL--LAGSDSGEVFVFR
   WD 5  206-244    -SG----ECKILPGQSSRCESGELSG---DGKKL--FTAYVNGSVKLWD
   WD 6  245-282    LKS----CQVLIDVNES--HPMGFGE---ITHAV--VACERESPFYVCA
   WD 7  293-334    NNG----PVSTI-QSEHGIECLAFAPSSADLKLF--ACGSLDGRISIWD
   WD 8  335-377    YAKSALRTICENPVPNDAVIRIKWLN---DHTIL--AATS-QGNLNAFD
   WD 9  381-419    -GI----LKFTLTGHYYHIYEFVYKP---QENLL--LTVSEDNTAKIFK

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSP---DGKRL--VSGSEDGTIKVWD