Input parameters:

  Query = FBpp0075302 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0075302, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKLDRVFAKPFVCNLSGHRDGVSCFGKHPKQLS 80  
WD40-rpts                   (_________________WD 1________________)   (_________________WD 2___

Query       81 TLATGAYDGEVRIWDLANRISSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPVNTILSKFGLH 160 
WD40-rpts      ______________)   (_________________WD 3________________)      (________________

Query      161 GISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLHTISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMK 240 
WD40-rpts      _WD 4________________)   (_________________WD 5_________________)   (___________

Query      241 SNKLAWNPMEAFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSASYDKTIRIYNAHHSHSRDIY 320 
WD40-rpts      ______WD 6________________)(___________________WD 7__________________)(_________

Query      321 HTKRMQHVVCVAWSLDNRYVFSGSDEMNVRMWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV 400 
WD40-rpts      __________WD 8__________________)   (_________________WD 9________________)     

Query      401 LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEV 446 
WD40-rpts                                                    

9 WD40-repeats found in QUERY=FBpp0075302 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-52       3.63  264.74  0.01672        7.5%     -1.15
  WD 2:  Seg  3    56-95       8.07  448.14  5.7e-05       32.5%     52.51
  WD 3:  Seg  7    99-137      9.15  492.42  1.4e-05       27.5%     56.53
  WD 4:  Seg 11   144-182      6.16  369.19  0.00066       15.0%     34.32
  WD 5:  Seg 15   186-225      7.51  425.05  0.00012       22.5%     56.15
  WD 6:  Seg 19   229-267      5.02  322.03  0.00284       15.0%     55.13
  WD 7:  Seg 23   268-310      9.67  514.28  7.3e-06       42.5%     52.88
  WD 8:  Seg 27   311-353      7.58  427.69  0.00011       20.0%     50.14
  WD 9:  Seg 31   357-395      6.24  372.53  0.00059        7.5%     34.50

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-52     -VR---ETKL---QQHKMPRNYDPSLHP-LE-GPREYVRALNATKLDR
   WD 2   56-95     -KP---FVCN---LSGHRDGVSCFGKHP-KQLSTLATGAYDGEVRIWD
   WD 3   99-137    -RI---SSRN---FVAHDGFVRGIAYTQ-NG-GRIFTVGDDKTIKVWK
   WD 4  144-182    -GE---DEVP---VNTILSKFGLHGISH-NR-RDNKFATCGEVCAIWD
   WD 5  186-225    -ND---PLKT---LKWGVDTLHTISYNPVET-SILACCASDRSIILYD
   WD 6  229-267    -AQ---PLRK---VVLTMK-SNKLAWNPMEA-FNFTVANEDCNLYTFD
   WD 7  268-310    TRKLQTPLKV---HFDHVSAVTDVDYSP-TG-KEFVSASYDKTIRIYN
   WD 8  311-353    AHH---SHSRDIYHTKRMQHVVCVAWSL-DN-RYVFSGSDEMNVRMWK
   WD 9  357-395    -SE---KLGV---IRPRERVNFNYQEAL-KQ-KYAAHPQIKRIARHRQ

   WD40 Template    TGE---CLRT---LSGHTSGVTSVSFSP-DG-KRLVSGSEDGTIKVWD