Input parameters:

  Query = FBpp0074971 (Len=553)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0074971, Len=553):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDDDDIQYIKRQRTLHYGSLEESERKRQNAAASGAAATTTSGTTASSGAGTTTTGTGGQLEDIDSDEDYEESTKKTSNA 80  
WD40-rpts                                      (______________WD 1_____________)               

Query       81 KQAGAPPPTAATLANKIDDDYFDLEMEMERDKVALLEEFERKKRARQINVSTDDTEIKSNLRQLNEPICYFGEGPAERRR 160 
WD40-rpts                                                                     (________________

Query      161 RLKELLAGLGENAINKRQYEDEERKQQQREQDQATWYHEGPDSLRIARLWLADYSLPRAKDRLVRAREALEVPSAARAGR 240 
WD40-rpts      __________________________________WD 2__________________________________________

Query      241 MVEMQKKLQSLAPLCSQVGDTRPVSSAAFSEDSSLLLTSSWSGLCKLWSVPDCELKQTLRGHASYVGGVALRPGVKADEE 320 
WD40-rpts      _______)  (_________________WD 3________________)   (____________________WD 4___

Query      321 NVVAMASGGHDGAVKLWGFNNEESIADITGHMPHRVSKVAFHPSGRFLATACYDSSWRLWDLEQKTEVLHQEGHAKPVHC 400 
WD40-rpts      _________________)   (_________________WD 5_________________)   (_______________

Query      401 LSYHSDGSVLVTGGLDAFGRVWDLRTGRCIMFLEGHLGAVFGVDFSPNGFHIATGSQDNTCKIWDLRRRQPVYTIPAHTN 480 
WD40-rpts      __WD 6________________)   (_________________WD 7________________)   (___________

Query      481 LISDVKYQQECGSFLVTCSYDSTTKIWSNKTWQPLKTLQGHDNKVISVDIAPNSQYIATTSFDRTFKLWSPDS 553 
WD40-rpts      ______WD 8_________________)   (_________________WD 9________________)   

9 WD40-repeats found in QUERY=FBpp0074971 (Len=553):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    33-65       4.71  309.34  0.00421       17.5%     13.18
  WD 2:  Seg  4   144-248      3.54  260.97  0.01878       15.0%     20.95
  WD 3:  Seg  6   251-289      8.57  468.87  3.0e-05       32.5%     53.81
  WD 4:  Seg 10   293-338      8.31  457.95  4.2e-05       40.0%     52.45
  WD 5:  Seg 14   342-381      8.40  461.83  3.7e-05       30.0%     56.44
  WD 6:  Seg 18   385-423      9.25  496.82  1.3e-05       32.5%     54.50
  WD 7:  Seg 22   427-465     10.79  560.49  1.7e-06       45.0%     54.75
  WD 8:  Seg 26   469-508      8.24  455.15  4.6e-05       30.0%     54.90
  WD 9:  Seg 30   512-550      9.81  519.74  6.1e-06       35.0%     53.74

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-65     -------ASGAA-------------A-T-----------------------TTSGTTAS--------------S----------GAG-------TTTTGTGGQ-----LEDID
   WD 2  144-248    LNEPICYFGEGPAERRRRLKELLAGL-GENAINKRQYEDEERKQQQREQDQATWYHEGPDSLRIARLWLADYSLPRAKDRLVRAREA-------LEVPSAARAGRMVEMQKKL
   WD 3  251-289    -LAPLCSQVGDT-------------R-P-----------------------VSSAAFSE--------------D----------SSL-------LLTSSWSGL-----CKLWS
   WD 4  293-338    -CELKQTLRGHA-------------S-Y-----------------------VGGVALRP--------------G----------VKADEENVVAMASGGHDGA-----VKLWG
   WD 5  342-381    -EESIADITGHM-------------PHR-----------------------VSKVAFHP--------------S----------GRF-------LATACYDSS-----WRLWD
   WD 6  385-423    -KTEVLHQEGHA-------------K-P-----------------------VHCLSYHS--------------D----------GSV-------LVTGGLDAF-----GRVWD
   WD 7  427-465    -GRCIMFLEGHL-------------G-A-----------------------VFGVDFSP--------------N----------GFH-------IATGSQDNT-----CKIWD
   WD 8  469-508    -RQPVYTIPAHT-------------N-L-----------------------ISDVKYQQ--------------E---------CGSF-------LVTCSYDST-----TKIWS
   WD 9  512-550    -WQPLKTLQGHD-------------N-K-----------------------VISVDIAP--------------N----------SQY-------IATTSFDRT-----FKLWS

   WD40 Template    TGECLRTLSGHT-------------S-G-----------------------VTSVSFSP--------------D----------GKR-------LVSGSEDGT-----IKVWD