Input parameters:

  Query = FBpp0074025 (Len=819)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0074025, Len=819):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALPRKLISKIYDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNLWAIGQNECFMSLTGHNRSIDCVRFAYKDNFVYSADD 80  
WD40-rpts                 (_______________WD 1______________)(__________________WD 2___________

Query       81 IGIIRRWDLNSQKIYSTLNGHMKSVRTLDFNPSGEYVVSGSNDTTVRLWDVQNENNCIKVCRGHMSHVNSVKFSPDGLWI 160 
WD40-rpts      _______)   (_________________WD 3________________)    (_________________WD 4____

Query      161 ASAGLEGSILIWDIRKSKQIMEFIADPPVTAITCVQFHPFEFLLAAGRVDGTVSIYDLEHQQLVSQTTHFYGQAIRCITF 240 
WD40-rpts      ____________)   (__________________WD 5_________________)(___________________WD 

Query      241 SDNGECLFVGSSSGISVIGWEPDRELDHIKSTWSSLADMKVVNNKLICGCHEIDTVSINTISLDRVIPFYQPPNSLPNFK 320 
WD40-rpts      6___________________)           (_________________WD 7________________)(________

Query      321 HNSTNRKSFTRGNQKFRLSVGGAKPAQVQEEHEGDKSGLSSPNYSLEVVNEAVLESAETSPMSSLPPVHLASMAGSSADL 400 
WD40-rpts      _____WD 8____________)   (_______________WD 9_______________)                   

Query      401 APHHVVYGGAIDSALRQGKYSRVPDNMASYGSSYGAIDTRLMSLNEPSSLHKPDIYNLYPLDKNEEADVQQLEFNLNDSN 480 
WD40-rpts                                                                                      

Query      481 PPILNNYDNYEMAEDFPVNQNLNYITNNYKPVPATSTINASSKSIKKTTTTTLHKRTTNNMAGAKQTSTGIFGGSKLSQV 560 
WD40-rpts                                                                                      

Query      561 SSVSSMELHKLDDNMVLKKSSSSNVVNKNKRPMGSAQSQFSKENNQQKNINVEIITKPPMRSRTTLDMRTSHQAKTQEKQ 640 
WD40-rpts                                                                                      

Query      641 IHQQQPMNNRIIMDDHDFDMLSRSHEAVLQELSNRQSSLDLLRHATRSHDVLGALRQARSCGKSIFIDLLGAILEKPSSW 720 
WD40-rpts                                                                                      

Query      721 NLDFCMFVLPEIYELLQSQHKFHFTRACDTLRIILSNFLPTIQENLDSWAANGLGVDVTREDRQRKCAECQRWLLQIKNL 800 
WD40-rpts                                                                                      

Query      801 PESTHFGSTLSQLQNIIIF 819 
WD40-rpts                         

9 WD40-repeats found in QUERY=FBpp0074025 (Len=819):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-46       8.01  445.62  6.1e-05       30.0%     45.41
  WD 2:  Seg  4    47-88       9.06  488.78  1.6e-05       32.5%     54.74
  WD 3:  Seg  8    92-130     10.43  545.34  2.8e-06       40.0%     49.76
  WD 4:  Seg 12   135-173     10.22  536.95  3.6e-06       42.5%     52.89
  WD 5:  Seg 16   177-217      7.38  419.31  0.00014       25.0%     55.76
  WD 6:  Seg 20   218-261      6.43  380.18  0.00047       22.5%     49.99
  WD 7:  Seg 24   273-311      5.77  353.16  0.00108       12.5%     46.75
  WD 8:  Seg 28   312-342      4.25  290.26  0.00761       12.5%     38.06
  WD 9:  Seg 31   346-381      5.09  325.11  0.00258       15.0%     30.33

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-46     ----------YDIKAH--DSRVTSLDLGETGRVLVTGGEDR-NVNLWA
   WD 2   47-88     IGQNE---CFMSLTGH--NRSIDCVRFAYKDNFVYSADDIG-IIRRWD
   WD 3   92-130    -Q--K---IYSTLNGH--MKSVRTLDFNPSGEYVVSGSNDT-TVRLWD
   WD 4  135-173    -N--N---CIKVCRGH--MSHVNSVKFSPDGLWIASAGLEG-SILIWD
   WD 5  177-217    -S--K---QIMEFIADPPVTAITCVQFHPFEFLLAAGRVDG-TVSIYD
   WD 6  218-261    LE--HQQLVSQTTHFY--GQAIRCITFSDNGECLFVGSSSGISVIGWE
   WD 7  273-311    -W--S---SLADMKVV--NNKLICGCHEIDTVSINTISLDR-VIPFYQ
   WD 8  312-342    --------------PP--NSLPNFKHNSTNRKSFTRGNQKF-RLSVGG
   WD 9  346-381    -A--Q---VQEEHEGD--KSGLSSPNYSLE---VVNEAVLE-SAETSP

   WD40 Template    TG--E---CLRTLSGH--TSGVTSVSFSPDGKRLVSGSEDG-TIKVWD