WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0073908 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0073908 (Len=919) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0073908, Len=919): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAIRRCYIAQNPKSSCRFNCVRERFEDLRGVPCLVYEGETRDWINAALFLEDENESEDRKRFVLHTSHSALLYMEYDLTS 80
WD40-rpts
Query 81 NADCTVLELARCTDSSILYYTKLHGSSFNKLAIISGNAFGELLVWQTQFPTESDPKSVMKTYPLLLRIEAHNGVIHSIEF 160
WD40-rpts (__________________WD 1_________________) (_________________W
Query 161 DLQSQLLVTTSDDRSVKFWNIQKSGDWTTAEIKPMFSCYGHSSRVMCVVILKIDDRTFVASGGEDSYVCIWSSSGELILK 240
WD40-rpts D 2________________) (__________________WD 3_________________) (____
Query 241 RRQQFGAPIWRLGFSQDAEILYSTSSTGNLVGQNLKEVLNRPKIESTILSSLGDANEFVRNLKFVNNEIIVGLSSLNRLY 320
WD40-rpts _____________WD 4________________) (_________________WD 5_____________
Query 321 YTRISPDSSHENKWLMVNDFPSYKRTVLEVFDDIIATCGHRRITLHRDRYLVSDNLGYCLLLQTHQLHIESHIALFNNRE 400
WD40-rpts ___) (________________WD 6_______________)(_______________________W
Query 401 PWITAALLISEQYLLLGNREGHVMLYCRSSASDDFQLKDSIRYLHGKMGSNFFKLLSLNADNAHVMSGGHEAFLKYLSVR 480
WD40-rpts D 7_______________________) (__________________WD 8_________________)
Query 481 FSDSTLRVSQREGIPLAWVEASPSDDLILGFNDNHIVAWSRRNDILLQLACGGGHRCWDFRLSDGDSQLSIAYVKQKRVY 560
WD40-rpts (_________________WD 9_________________) (_________________WD10_______________
Query 561 FYRNSLYNAVDNRLKDIEPNNWHVRNCNTLRLITPRNQSDPFILSAGDDNIIKVTQVTNDSLSQRAEMHSHISTVRSLQA 640
WD40-rpts __)(________________________WD11_______________________) (_____________________
Query 641 IPYKSNGGDSSTWLVFSVGGRSQLCISQLSIDASNKCWISEISSHTLHNVAASKTSTIEARLMAIDVVQHSDGDLFSIYV 720
WD40-rpts _WD12______________________) (_________________WD13_______
Query 721 AGGDGNISHYIWELETPNQLDLKHFVDIQRCPLGIQWIASKGMLLVSTTNGEVYGFDRTLETTYFQLQLHVTGINTIDIY 800
WD40-rpts __________) (___________________WD14___________________) (__________________W
Query 801 VDRHLLHILSGGDDESIKYTVLNLNNNNVEQKIEYLGLHNAQVNALAIHCPTKSVAASELFAYTCSIDRQIYRIDLSTHK 880
WD40-rpts D15_________________) (____________________WD16____________________) (_
Query 881 YKRVGYTCIADVKGMLLDEHQRMYFYGCGLQTMSISNIL 919
WD40-rpts ________________WD17________________)
 17 WD40-repeats found in QUERY=FBpp0073908 (Len=919): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 86-126 5.13 326.55 0.00247 22.5% 23.69 WD 2: Seg 11 142-180 8.23 454.56 4.6e-05 25.0% 53.03 WD 3: Seg 15 192-232 6.83 396.65 0.00028 27.5% 52.31 WD 4: Seg 19 236-274 7.78 436.16 8.2e-05 20.0% 55.59 WD 5: Seg 23 286-324 5.77 353.05 0.00109 12.5% 46.60 WD 6: Seg 28 339-375 4.25 290.27 0.00760 10.0% 11.90 WD 7: Seg 32 376-427 5.09 324.84 0.00261 17.5% 52.99 WD 8: Seg 36 438-478 6.23 372.00 0.00060 20.0% 45.97 WD 9: Seg 40 481-520 8.60 469.75 2.9e-05 15.0% 49.47 WD10: Seg 44 524-563 4.35 294.26 0.00672 10.0% 47.80 WD11: Seg 48 564-616 5.43 338.97 0.00168 15.0% 40.21 WD12: Seg 51 619-668 5.52 342.55 0.00150 15.0% 44.54 WD13: Seg 57 692-731 4.24 289.79 0.00772 10.0% 29.93 WD14: Seg 60 734-777 6.57 385.88 0.00039 10.0% 54.20 WD15: Seg 64 781-821 6.59 387.06 0.00038 25.0% 52.94 WD16: Seg 68 830-875 5.23 330.73 0.00217 17.5% 49.79 WD17: Seg 72 879-917 6.03 363.74 0.00078 10.0% 38.06Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 86-126 VL---------E----L--A------------RCTDSS--ILYYTKLHGS-------SF--------NKLAI--ISGN-AFGELLVWQ WD 2 142-180 -Y---------P----L--L------------LRIEAH--NGVIHSI-EF-------DL--------QSQLL--VTTS-DDRSVKFWN WD 3 192-232 -I---------K----P--M------------FSCYGH--SSRVMCV-VI-------LK------IDDRTFV--ASGG-EDSYVCIWS WD 4 236-274 -E---------L----I--L------------KRRQQF--GAPIWRL-GF-------SQ--------DAEIL--YSTS-STGNLVGQN WD 5 286-324 -S---------T----I--L------------SSLGDA--NEFVRNL-KF-------VN--------NEIIV--GLSS-LNRLYYTRI WD 6 339-375 D------------------F------------PSYKRT--VLEVFDD-II-------AT--------CGHRR--ITLH-RDRYLVSDN WD 7 376-427 LG---------Y----C--LLLQTHQLHIESHIALFNN--REPWITA-AL-------LI--------SEQYL--LLGN-REGHVMLYC WD 8 438-478 -K---------D----S--I------------RYLHGKMGSNFFKLL-SL-------NA--------DNAHV--MSGG-HEAFLKYLS WD 9 481-520 FS---------D----S--T------------LRVSQR--EGIPLAW-VE-------AS--------PSDDL--ILGF-NDNHIVAWS WD10 524-563 -D---------I----L--L------------QLACGG--GHRCWDF-RL-------SD--------GDSQL--SIAYVKQKRVYFYR WD11 564-616 NSLYNAVDNRLK----D--I------------EPNNWH--VRNCNTL-RL---ITPRNQ--------SDPFI--LSAG-DDNIIKVTQ WD12 619-668 ND---------S----LSQR------------AEMHSH--ISTVRSL-QA-------IPYKSNGGDSSTWLV--FSVG-GRSQLCISQ WD13 692-731 AS---------K----T--S------------TIEARL--MAIDVVQ-HS-------DG--------DLFSI--YVAG-GDGNISHYI WD14 734-777 LE---------TPNQLD--L------------KHFVDI--QRCPLGI-QW-------IA--------SKGML--LVST-TNGEVYGFD WD15 781-821 -E---------T----T--Y------------FQLQLH--VTGINTI-DI-------YV--------DRHLLHILSGG-DDESIKYTV WD16 830-875 -E---------Q----K--I------------EYLGLH--NAQVNAL-AIHCPTKSVAA--------SELFA--YTCS-IDRQIYRID WD17 879-917 -H---------K----Y--K------------RVGYTC--IADVKGM-LL-------DE--------HQRMY--FYGC-GLQTMSISN WD40 Template TG---------E----C--L------------RTLSGH--TSGVTSV-SF-------SP--------DGKRL--VSGS-EDGTIKVWD |
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