Input parameters:

  Query = FBpp0073828 (Len=1224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073828, Len=1224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKSSGRDRDRERDRERERERDRERERDRDRERDNRHDSRSRDYDMGKSRNGGGGGAGGGSRNMREDRKRGKDMISDRGK 80  
WD40-rpts                                                                                      

Query       81 RDDKRRKCSRSKDYEKDNSPHYRRLDKDRDRDRDRDRQREKEREREKEKEREKEKERERDKDRERDRQREKESDSRRAAA 160 
WD40-rpts                                                                                      

Query      161 AAPLIIPLLSTSCSEEEVEEIDKEEQQRRLEQEMIKRRERIERWRAERKRDTKAAVVAPSLVNSAKKWSLEDESEEDDSN 240 
WD40-rpts                                                                                      

Query      241 PAPPLDSGKKDAEPDSPPSKFHSIRKRFDDDVVESKFSPVKRPTFSKSFGKLGIGLATKAEADIKKEPPPVDTKKEIKKK 320 
WD40-rpts                                                                                      

Query      321 PEPVAAKMEIVEEPTVAAGEKTKKEPEQPHVGAKSEPEVEDKPQPEAEPEDEIDPLDAYMQEVNNEMRRVNNFVNPPAKS 400 
WD40-rpts                                                                                      

Query      401 QGVVILTGVAKKKTTTLKKGEVIEQNMDSLEYSSEDELEDIRDTAVNLAMKHRKELAKIDHSSVTYAPFRKNFYVEVPEL 480 
WD40-rpts                                                                                      

Query      481 TRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGK 560 
WD40-rpts                                                                                      

Query      561 TLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640 
WD40-rpts                                                       (__________________________WD 1

Query      641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVI 720 
WD40-rpts      __________________________)                                                     

Query      721 VGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI 800 
WD40-rpts                                                                                      

Query      801 IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880 
WD40-rpts                                                                                      

Query      881 TLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAAKESKKLQKAALGLADSDDEEDIEQDIDQQIEQIF 960 
WD40-rpts                                                                                      

Query      961 AAKRTVKDTSAAATAAAAAAAAAAAAAAAVSGANPALASAAAQAAAAAAAANIAIAAASAPAAAGGAPSVAMGGALSSDK 1040
WD40-rpts                                                                                      

Query     1041 LELAKRLASKINSSKNLDTKGSVVTVEPMIKGPHVTGAAATLLTARTVAEQMAAKLNNKLNYQPKEDEEGLGPLVGGTTN 1120
WD40-rpts                                                                                      

Query     1121 PFTKYEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPQGKNPPDGERKLYLAIESCSELAVQKAKREITR 1200
WD40-rpts                                                                                      

Query     1201 LIKEELLKLSSAHHVFNKGRYKVV 1224
WD40-rpts                              

1 WD40-repeats found in QUERY=FBpp0073828 (Len=1224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   610-667      3.03  239.85  0.03586       22.5%     28.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  610-667    LGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPD--------GKRLVSGSEDGTIKVWD