Input parameters:

  Query = FBpp0073459 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0073459, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMEDVQKHSVHTLIFRSLKRTHDLFVSNQGNLPEIDERLEKLRRSIKAKDGYGLVLDKVAKIGEARKASGAQTPGDKTL 80  
WD40-rpts                                                                      (_______________

Query       81 AITDGSATDAASGAGSLVKYNAGARPAEKTAPLVTGTHTSLVRASLANSNADMSANGAIASHLQLIPKKAPSIPKPKWHA 160 
WD40-rpts      _WD 1_______________)(____________________WD 2____________________)             

Query      161 PWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRVIKIWDLASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKC 240 
WD40-rpts       (_________________WD 3________________)   (_________________WD 4_______________

Query      241 WDLEYNKVIRHYHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNTVASVVAQATNPQIITGSHDS 320 
WD40-rpts      _)   (_________________WD 5________________)   (_________________WD 6___________

Query      321 TVRLWDLAAGKSVCTLTNHKKSVRSIVLHPSLYMFASASPDNIKQWRCPEGKFVQNISGHTSIVNCMAANSEGVLVSGGD 400 
WD40-rpts      _____)   (________________WD 7________________)   (________________WD 8_________

Query      401 NGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIFAMCFDQSGSRLITAEADKTIKVYKEDDEASEESHPINWRPDLLKRR 480 
WD40-rpts      _______)           (_________________WD 9________________)                      

Query      481 KF 482 
WD40-rpts        

9 WD40-repeats found in QUERY=FBpp0073459 (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    65-101      6.44  380.51  0.00046       17.5%     30.56
  WD 2:  Seg  4   102-147      6.78  394.68  0.00030       15.0%     42.95
  WD 3:  Seg  7   162-200      8.95  484.40  1.8e-05       30.0%     53.07
  WD 4:  Seg 11   204-242      9.70  515.52  7.0e-06       37.5%     56.58
  WD 5:  Seg 15   246-284      9.56  509.59  8.4e-06       30.0%     58.17
  WD 6:  Seg 19   288-326      9.96  525.96  5.1e-06       35.0%     52.61
  WD 7:  Seg 23   330-367      7.97  444.00  6.5e-05       32.5%     50.07
  WD 8:  Seg 27   371-408      8.62  470.66  2.8e-05       40.0%     54.10
  WD 9:  Seg 32   420-458      8.25  455.31  4.5e-05       25.0%     37.72

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   65-101    -----------EARKASGAQTPGDKTLAITDGSATDAASGAGSLVKYN
   WD 2  102-147    AGARPAEKTAP--LVTGTHTSLVRASLANSNADMSANGAIASHLQLIP
   WD 3  162-200    -W------KLS--RVISGHLGWVRCIAVEPGNEWFATGAGDRVIKIWD
   WD 4  204-242    -G------KLK--LSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWD
   WD 5  246-284    -N------KVI--RHYHGHLSAVYSLALHPTIDVLATSGRDSTARIWD
   WD 6  288-326    -K------ANV--HTLTGHTNTVASVVAQATNPQIITGSHDSTVRLWD
   WD 7  330-367    -G------KSV--CTLTNHKKSVRSIVLHPSLYMFASASPD-NIKQWR
   WD 8  371-408    -G------KFV--QNISGHTSIVNCMAANSEG-VLVSGGDNGTMFFWD
   WD 9  420-458    -A------PVQ--PGSMDSEAGIFAMCFDQSGSRLITAEADKTIKVYK

   WD40 Template    TG------ECL--RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD