Input parameters:

  Query = FBpp0072694 (Len=1234)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072694, Len=1234):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTNFESKSARVKGLSFHPKRPWILVSLHSGVIQLWDYRMHTLLEKFDEHDGPVRGVAFHQQMPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KQRRCIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWNWQSRNCICVLTGHNHYVMCAQFHPTEDQIVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNVAPGPGGLDDHLKGHPGATDLFGQADAVVKHVLEGHDRGVNWASFHPTLPLIVSGADDRLVKLWRMNEY 240 
WD40-rpts      __)                                  (_________________WD 5________________)(___

Query      241 KAWEVDTCRGHYNNVSSVLFHPRQDLILSNGEDRSIRVWDMTKRQCLFTFRRDNERFWILTAHPTLNLFAAGHDGGMVVF 320 
WD40-rpts      ________________WD 6___________________)   (________________WD 7________________

Query      321 KLERERPAYAVHGNILYYVKERFLRKLDFTTTKDTVVMQLRPGKSPVYSMSYNPALNAVLICTRTNNLENSTYDLCQIPK 400 
WD40-rpts      )                                (_________________WD 8________________)        

Query      401 DTESQSESDSKRSSGITAIWVARNRFAVLDRNQQLVIKNFKNEVTKKLPTFCEEIFYAGTGMLLIRDPEFVTLYEVQRLV 480 
WD40-rpts                                                                                      

Query      481 SVGSIKLAKCRYVVWSPDMSLVALLCKHSVTICDRRLQYLCTVQENCRVKSGAWDESGVFIYTTSNHIKYAITNGDHGII 560 
WD40-rpts                                        (_________________WD 9_________________)      

Query      561 RTLDLPIYLTRVKGNQVFCLDRECRTRVLHIDPTEYKFKLALIQRKYDEVLHMVRNARLVGQSIIAYLQQKGYPEVALHF 640 
WD40-rpts                                                                                      

Query      641 VKDEKTRFGLALECGNIEIALEAAKALDDKDCWDRLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLITGNLEKLKKMNK 720 
WD40-rpts                                                                                      

Query      721 IAEIRKDVSAQYQGALLLGDVKERVNILKNCGQLSLAYLTAATHGFDELTESLGESITSQGNSLPEVNPNAQLLQPPVPI 800 
WD40-rpts                                                                                      

Query      801 QQLETNWPLLSVSKGFFEGAMVTRAGSSATARQALNINADAALLDEHNGGGDGWGADADLGLDEDGDDEMHDALSNDGDG 880 
WD40-rpts                                                                                      

Query      881 GAGGEEGAGWDVGDDDLVVPEELASKIKASALDSNYYAAPNKGLSPAQQWANNSPLVLDHVKAGSFETAFRLLHDQLGVV 960 
WD40-rpts                                                                                      

Query      961 NFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVARLQAGYQLTTSGKFSEAVEKFH 1040
WD40-rpts                                                                                      

Query     1041 SILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKSTLEEQKRLCEMAAYFTHCKLQPVHQILTLRTALN 1120
WD40-rpts                                                                                      

Query     1121 MFFKLKNYKTAASFARRLLELAPRPDVAQQVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSS 1200
WD40-rpts                                                                                      

Query     1201 SFDPQFKGNLCTVCEVSQIGKDSIGLRISNLQFR 1234
WD40-rpts                                        

9 WD40-repeats found in QUERY=FBpp0072694 (Len=1234):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.01  321.47  0.00289       22.5%     46.62
  WD 2:  Seg  4    41-79       7.27  415.05  0.00016       32.5%     56.86
  WD 3:  Seg  8    83-121      8.27  456.19  4.4e-05       32.5%     56.77
  WD 4:  Seg 12   125-163      8.85  480.30  2.1e-05       37.5%     56.49
  WD 5:  Seg 19   198-236      8.41  462.17  3.7e-05       35.0%     56.53
  WD 6:  Seg 23   237-280      8.34  459.20  4.0e-05       40.0%     54.08
  WD 7:  Seg 27   284-321      3.40  254.99  0.02257       20.0%     57.97
  WD 8:  Seg 34   354-392      3.70  267.49  0.01537       15.0%     54.55
  WD 9:  Seg 49   515-554      3.20  246.74  0.02906       10.0%     40.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     -------MLTNFESKSARVKGLSFHPKRPWILVSLHSGVIQLWD
   WD 2   41-79     -HT----LLEKFDEHDGPVRGVAFHQQMPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR----CIFTLLAHLDYVRTVAFHHEYPWILSASDDQTIRIWN
   WD 4  125-163    -RN----CICVLTGHNHYVMCAQFHPTEDQIVSASLDQTVRVWD
   WD 5  198-236    -AV----VKHVLEGHDRGVNWASFHPTLPLIVSGADDRLVKLWR
   WD 6  237-280    MNEYKAWEVDTCRGHYNNVSSVLFHPRQDLILSNGEDRSIRVWD
   WD 7  284-321    -RQ----CLFTFRRDNERFWILTAHPTLNLFAAGH-DGGMVVFK
   WD 8  354-392    -DT----VVMQLRPGKSPVYSMSYNPALNAVLICTRTNNLENST
   WD 9  515-554    RRL----QYLCTVQENCRVKSGAWDESGVFIYTTSNHIKYAITN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD