Input parameters:

  Query = FBpp0072216 (Len=637)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0072216, Len=637):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKTKEDLKRSAPEEENEPQEESVSSEKEAEGEEDAWIGPMPSEQSAPAPAKKKKVLPYEHIYLENLPNAESYERSYMH 80  
WD40-rpts                                                                            (_________

Query       81 RDVITHLVCTKTDFVVTASLDGHIKFWKKGELGIEFVKHFRSHLVPIKSLTTNDSGTLLCSAATDQTAKVFDVVNFDMIN 160 
WD40-rpts      _______WD 1________________) (___________________WD 2__________________)        

Query      161 IIRLGYTPQCSEWINGPGDAVQALAISDSESSRIHIYDGQGGGEALHTLEKLHSAPVVAMCLNVAMETVISVDRNGILEY 240 
WD40-rpts                                                                                (_____

Query      241 WQNSKYDYKFPQRLVNFDSKLDTSLFEFAKQKTQVTGLAATPDGKRFAAISTDRKVRVFQFNTGKLIRVFDEALSTYTQM 320 
WD40-rpts      _________________________WD 3______________________________)                    

Query      321 QQTKHALPNMEFGRRMAAERDLEKTAQNATLNILFDSTGNFLLYPTMLGIKVINVVTNRCVTILGKTDNIRPLQVALFQG 400 
WD40-rpts                                                                                      

Query      401 RIKRQKAAITMEQEASENPALQNILNDPTAFCTAYKKSRFYLYSRRLPSDLQDVDRDIFNEKPSKEDIIAVPEASVVQRI 480 
WD40-rpts                                                                                      

Query      481 YENVVLHTTKGDIHMRLFFKEVPKTVENFCVHAKNGYYNGHIFHRVIKGFMVQTGDPTGTGTGGKSIWGSDFKDEFVPSL 560 
WD40-rpts                                                                                      

Query      561 KHDRPYTVSMANAGPNTNGSQFFITVLPTPWLDNKHTVFGRVYRGMEVVLNICNSKANPKTDKPYDDIKIISIHLSN 637 
WD40-rpts                                                                                   

3 WD40-repeats found in QUERY=FBpp0072216 (Len=637):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    71-108      3.38  254.23  0.02310       25.0%     39.21
  WD 2:  Seg  4   110-152      5.95  360.64  0.00086       27.5%     53.14
  WD 3:  Seg 15   235-300      3.96  278.16  0.01106       32.5%     53.76

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-108    -A---ESYE-----------------RSYMHRD---------VITHLVCTKTD-FVVTASLDGHIKFWK
   WD 2  110-152    GELGIEFVK-----------------HFRSHLV---------PIKSLTTNDSGTLLCSAATDQTAKVFD
   WD 3  235-300    NG---ILEYWQNSKYDYKFPQRLVNFDSKLDTSLFEFAKQKTQVTGLAATPDGKRFAAISTDRKVRVFQ

   WD40 Template    TG---ECLR-----------------TLSGHTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD