Input parameters:

  Query = F56H6.5 (Len=382)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F56H6.5, Len=382):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEARNAEGLESCIEKIQEVKLSSFAELKAFRERKVALITGITGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYG 80  
WD40-rpts                                                                                      

Query       81 NPVTHNGSASFSLHYGDMTDSSCLIKLISTIEPTEIYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVR 160 
WD40-rpts                                                                                      

Query      161 FYQASTSELYGKVQEIPQSELTPFYPRSPYAVAKMYGYWIVVNYREAYKMFACNGILFNHESPRRGETFVTRKITRSVAK 240 
WD40-rpts                                                                                      

Query      241 ISLRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKN 320 
WD40-rpts        (_______________________________WD 1_______________________________)          

Query      321 QDGVVRVKVSPKYYRPTEVETLLGNPAKARKTLGWEPKITVPELVKEMVASDIALMEADPMA 382 
WD40-rpts                                                                    

1 WD40-repeats found in QUERY=F56H6.5 (Len=382):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   243-310      2.94  236.09  0.04022       17.5%     -2.42

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  243-310    LRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIATGKQFSVREFCNLAFAEIGEQLVWE

   WD40 Template    TGECLRTLSGHTSGVTSVSF---------------SPDGKRLVSGSEDG-------------TIKVWD