Input parameters:

  Query = F56F10.4 (Len=958)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F56F10.4, Len=958):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSILRFIRSKFYHEPEEHAIEQYAVFDEGNRGGFTSDVVAFDYHNGCVVIGSKNGEVTFYGYRGASWTVSLSKDSENKA 80  
WD40-rpts                              (________________WD 1________________)                  

Query       81 RIEHIFFISSNIALVLCDGQLIIPIHIKDGVITKKEELRFNENHKSKWDITHVQKLSDDTFALVFSMNNTIYRIKSKTLK 160 
WD40-rpts                                                                                 (____

Query      161 SEVLVKAEDFEKWLPDDTELASITCLPEKPSILMLIAENGCVGVFNESQFVMKTSLRNYEDEAIQKLHWSSEKKKNVAFG 240 
WD40-rpts      ___________________WD 2______________________)(____________________WD 3_________

Query      241 ISCNNKYTKWEFTVGKDCQISAQEVNVYSANQFGPYPCHQIRHFSVCADASDPNENFLIYQGGKSSGKYDDRDLITISHG 320 
WD40-rpts      __________)                                                                     

Query      321 DFVEKLELSSEIVGIVGVSGSYGTENYSNYFFPNFEYVPEDCKKSGVVLICTKCEIIGIDLERESLNMMQPKHFLSINNS 400 
WD40-rpts                                                                                      

Query      401 TPTTHSRAIEIEENVWNRLESASKSYWETNQMSTRDWPLNFQKKIVTDANHQRASYRQVYLSGHSNGNICIWSSGGVGMS 480 
WD40-rpts                                                                                      

Query      481 LMLVIRTSLEFDGASSFDNEDSNYYNSDEKPEKPVRKIGLYDPFDDDEEMCITRVHFDPKSGIVIGTNRGGYVLMYELWD 560 
WD40-rpts                                                                                      

Query      561 SARTLTHWEATPISCNNSPPDTRKRALKPRKAELKYNAGYQIRLKNESDLPLVFSMHPSHRITDIVYLHKYHCLAVGSNF 640 
WD40-rpts                                                                                      

Query      641 GIVMLDVNFGYLVYANSFNDDNNDSSNVSANQFQRFKSLKKSLRKTFRRKKKGTETLMDSGGAVASSSNHVQHETSPKRI 720 
WD40-rpts                                                                                      

Query      721 DDFEEEEVFMERPIEAREELGVLDCYAENSKGTVTCLRMMRFPVLDDKNVDDIIAVGLHEGSVYFYAISEHDVGLRMTFK 800 
WD40-rpts                                                                                      

Query      801 AEQIKKLSIPHKQPVVNLDITNEEGYFSASTRIVVITEEQLRIYNCQPMVKRDSYKITALEGLKIKNGMVARILNKKNSN 880 
WD40-rpts                                                                                      

Query      881 NFESFVVLVANDGSLRVHSVQKASSFESRKFIDPIDVMALNSSCLSRDGDVAFLIKSSELQRSTVNLNFRGWSSTHKS 958 
WD40-rpts                                                                                    

3 WD40-repeats found in QUERY=F56F10.4 (Len=958):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    25-62       3.63  264.75  0.01672       15.0%     28.59
  WD 2:  Seg 12   156-206      3.23  247.88  0.02806       15.0%     37.23
  WD 3:  Seg 16   207-251      2.93  235.63  0.04079       15.0%     51.93

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-62     ----AVFDEGN---RGG----------FTSDVVAFDY-HNGCVV--IGSKNGEVTFYG
   WD 2  156-206    SKTL--KSEVL---VKAEDFEKWLPDDTELASITCLPEKPSILM--LIAENGCVGVFN
   WD 3  207-251    ESQF--VMKTSLRNYED----------EAIQKLHWSS-EKKKNVAFGISCNNKYTKWE

   WD40 Template    TGEC--LRTLS---GHT----------SGVTSVSFSP-DGKRLV--SGSEDGTIKVWD