Input parameters:

  Query = F56C9.10b (Len=1031)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F56C9.10b, Len=1031):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPNANSVGGPKKKNKKNHQRPQQQHQQTQPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKVEETVAPTIEKEK 80  
WD40-rpts                                                                                      

Query       81 NISGDLLDFSSSDKSSLSSRPNVKDSPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEMLVDMSLDDAPAAPPRK 160 
WD40-rpts                                                                                      

Query      161 PHQRSAPPPIPSMNTIMTKPRTNSVSYIKGQVVRQSAVEQQTLANQVVDLVAMGMSKGQTQSSQITAEKAEWVQLTSVEK 240 
WD40-rpts                                                                                      

Query      241 AGEPNERLEVLIVGLCRGYQIWTMSQSGEFEEVLSERQGPVRALKVLPNNLKLRGKKDSFADSRPLIAMVDASSHHPDRQ 320 
WD40-rpts                                                                                      

Query      321 YCSVTIISLLTGREVHKIKFEEPVCAVNVSDQFLVVSLANMAYAYDILTFNEVRTIRTAPSCENSPPALSLSCQLLAYAD 400 
WD40-rpts                                                                                      

Query      401 TSLDLNLQSSGGLAAEVEATSSEKYTDHIYTAMSYFSRSVKTISESVGAGSGSSTKANQPQGVITVLNLAVSGEDESDGV 480 
WD40-rpts                                                                                   (__

Query      481 MCHYVAHVDPISYIAFSPDQRLVLSADANANVFNIFLLMPHATSSSLAAVQHLYKLNRGSTPAKVVSTAFSEDCRWLAIT 560 
WD40-rpts      _______________WD 1________________)                                            

Query      561 TNHATTHVFAVCPFGGKPNQRTHGDTFVNKESRFHRSAGLTDAADVTASIGPSKHRAMADSCSYTKEHPIAVNSPTLAKT 640 
WD40-rpts                                                                                      

Query      641 NGNSRVGPFPPPLLLVATEKIKDSRYTKEDLSAWAADMTSFSYPAAQASSSPAVAARRRLEVSRMSVMFRMKSYNSTTST 720 
WD40-rpts                                                                                      

Query      721 KTAKTTKMLMSMSLVIAKVDPAQGVIVTQHDIKSLRKEGETNMEASPQISVAPVGGWILQRTKNNADMHAPMPSASPLMA 800 
WD40-rpts                                                                                      

Query      801 FATVETVPAKRIGDEDVWTPHVETRTYLPPHRWIWQGPQFELFEYREDDQPSLMSPGNKGSNASFKSIPVLVGSEAVNIT 880 
WD40-rpts                                                                                      

Query      881 MKTIPADATRIECGSYTSANSYSIDQGSDQPVIGGYSSATNGDYIASIADAMRDISSDDDSTKKKSPKNDDLIEEFFDTE 960 
WD40-rpts                                                                                      

Query      961 SSTPFARNGSGSSSSTGATGGKSLKKKKTPPASAPLPTSSTKSSQKDKKVQNGRERSKDSDDFGTFDMDDI 1031
WD40-rpts                                                                             

1 WD40-repeats found in QUERY=F56C9.10b (Len=1031):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   478-516      3.89  275.40  0.01204       15.0%     52.05

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  478-516    DGVMCHYVAHVDPISYIAFSPDQRLVLSADANANVFNIF

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD