Input parameters:

  Query = F56C9.10a (Len=1028)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F56C9.10a, Len=1028):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPNANSVGGPKKKNKKNHQRPQQQHQQTQPQPLPEEEQPENPIKKDPKPEVLEEVVEKNREEDKEKVEETVAPTIEKEK 80  
WD40-rpts                                                                                      

Query       81 NISGDLLDFSSSDKSSLSSRPDSPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEMLVDMSLDDAPAAPPRKPHQ 160 
WD40-rpts                                                                                      

Query      161 RSAPPPIPSMNTIMTKPRTNSVSYIKGQVVRQSAVEQQTLANQVVDLVAMGMSKGQTQSSQITAEKAEWVQLTSVEKAGE 240 
WD40-rpts                                                                                      

Query      241 PNERLEVLIVGLCRGYQIWTMSQSGEFEEVLSERQGPVRALKVLPNNLKLRGKKDSFADSRPLIAMVDASSHHPDRQYCS 320 
WD40-rpts                                                                                      

Query      321 VTIISLLTGREVHKIKFEEPVCAVNVSDQFLVVSLANMAYAYDILTFNEVRTIRTAPSCENSPPALSLSCQLLAYADTSL 400 
WD40-rpts                                                                                      

Query      401 DLNLQSSGGLAAEVEATSSEKYTDHIYTAMSYFSRSVKTISESVGAGSGSSTKANQPQGVITVLNLAVSGEDESDGVMCH 480 
WD40-rpts                                                                                (_____

Query      481 YVAHVDPISYIAFSPDQRLVLSADANANVFNIFLLMPHATSSSLAAVQHLYKLNRGSTPAKVVSTAFSEDCRWLAITTNH 560 
WD40-rpts      ____________WD 1________________)                                               

Query      561 ATTHVFAVCPFGGKPNQRTHGDTFVNKESRFHRSAGLTDAADVTASIGPSKHRAMADSCSYTKEHPIAVNSPTLAKTNGN 640 
WD40-rpts                                                                                      

Query      641 SRVGPFPPPLLLVATEKIKDSRYTKEDLSAWAADMTSFSYPAAQASSSPAVAARRRLEVSRMSVMFRMKSYNSTTSTKTA 720 
WD40-rpts                                                                                      

Query      721 KTTKMLMSMSLVIAKVDPAQGVIVTQHDIKSLRKEGETNMEASPQISVAPVGGWILQRTKNNADMHAPMPSASPLMAFAT 800 
WD40-rpts                                                                                      

Query      801 VETVPAKRIGDEDVWTPHVETRTYLPPHRWIWQGPQFELFEYREDDQPSLMSPGNKGSNASFKSIPVLVGSEAVNITMKT 880 
WD40-rpts                                                                                      

Query      881 IPADATRIECGSYTSANSYSIDQGSDQPVIGGYSSATNGDYIASIADAMRDISSDDDSTKKKSPKNDDLIEEFFDTESST 960 
WD40-rpts                                                                                      

Query      961 PFARNGSGSSSSTGATGGKSLKKKKTPPASAPLPTSSTKSSQKDKKVQNGRERSKDSDDFGTFDMDDI 1028
WD40-rpts                                                                          

1 WD40-repeats found in QUERY=F56C9.10a (Len=1028):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   475-513      3.96  278.16  0.01106       15.0%     52.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  475-513    DGVMCHYVAHVDPISYIAFSPDQRLVLSADANANVFNIF

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD