Input parameters:

  Query = F54C4.3b (Len=1145)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F54C4.3b, Len=1145):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKNDEQDDVDVVNVPTNIDFQCNLCEYVGKSDRSLSAHKRHRHPRPEGQEDDKKPRGRPKKYEDSPVPLQRVTTKQLLG 80  
WD40-rpts                                                                                      

Query       81 GRKRPKTIVECVDDSAIRTDKEASRLHGLGIIDEETSLGDYVRRGANYQLMGGSDMNLDGNSMIVGQEVVIDHEEDEEND 160 
WD40-rpts                                                                                      

Query      161 DSPMLDSIPAGKNLERRKIRKSGRACASIRLSAKNRQISRSSHMRKVHPNEHAERKRNAPGYNSNGTYNCHFPLCQWRGW 240 
WD40-rpts                                                                                      

Query      241 SRSTRSTHLRKAHPEWRPDDNRVMTVLSCFYCKSSFHTYAQLADHTITHGGLALMISQSFDNKHHFSAWLQQMERVYSVT 320 
WD40-rpts                                                                                      

Query      321 FERSEFGSDPELQDLHNYVLHCDCVGGRGEQLATDSRAYIDQKHTNFKFSGAYIYQKHNFLKRRHPQLLTRNKNDCCVHL 400 
WD40-rpts                                                                                      

Query      401 EVREDSEYGPIHVKGTLEHTGHRFGTPLLRMLFEGFTMDHYTTPRSVILMEPLHTNQFQSLREFIEAPSTSTYQNPYFSV 480 
WD40-rpts                                                                                      

Query      481 DFGDSPEQFSFGYMSDEMQKLWSKYAPGRTITIDSSPLEFGEVDLFQYSVIVTDENYIPKCAMIYVTTDNSRAPHTILRQ 560 
WD40-rpts                                                                                      

Query      561 MKAVEPRPPTIFMVDPSQLWVELIQDLWPTDLDNPESEVTILISEWTLMDYWAAKTEELVKNEFDVFCIVTALRRMLRVE 640 
WD40-rpts                                                                                      

Query      641 DAHQLYYTIVELFEAFFECGYDGLAEFFDAQLSDMEYFKRWGPLHRTTLTSHAHPTLGASFRILRDWYLNPANMDHDAPR 720 
WD40-rpts                                               (________________________________WD 1__

Query      721 VDQWFSHICQRIEDFNAITNTQTYTLRPLDPPHKFFYTTVEDEEGEEAEHENPFKNPQILMYDDDGDEVVVEEEIIGHEI 800 
WD40-rpts      _____________________________)                                                  

Query      801 DGASELQGSELPDEEVIYETYEDYPEYGGHYDLEEEHKMHHNMRLEEEELQQHLHEQQKPEHLSHQTEELGELQDHHHHH 880 
WD40-rpts                                                                                      

Query      881 HHHLDEDPEATAEGPSEIVEHDDEEEQEDLVDVEMVDDQHEQHEIPAKIPPHRQRLYQKLDPMPVISHELPRSPSRRIRI 960 
WD40-rpts                                                                                      

Query      961 PTRKIQELDQESVLPPPPRRETTRSVVRSRKRRDRFAELRDCPPEVMRAIAAHAIAYDGRKKEQRPIVYVPRQAKMAMSS 1040
WD40-rpts                                                                                      

Query     1041 TPTAPTPPEDYDGPPGHQMTTILQHQRQAKQEEEEEQWSGEYDDELHEQEHDPATSSPPPSLLPHTGPSEIVHHEEEVHM 1120
WD40-rpts                                                                                      

Query     1121 MLPEEEADLMDDDDQQPCTSASMYR 1145
WD40-rpts                               

1 WD40-repeats found in QUERY=F54C4.3b (Len=1145):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   682-750      3.46  257.56  0.02086       20.0%     -11.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  682-750    GPLHRTTLTSHAHPTLGASFRILRDWYLNPANMDHDAPRVDQWFSHICQRIEDFNAITNTQTYTLRPLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP---DGKRLVSGSEDG--------------------------TIKVWD