Input parameters:

  Query = F54C4.3a (Len=1234)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F54C4.3a, Len=1234):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKNDEQDDVDVVNVPTNIDFQCNLCEYVGKSDRSLSAHKRHRHPRPEGQEDDKKPRGRPKKYEDSPVPLQRVTTKQLLG 80  
WD40-rpts                                                                                      

Query       81 GRKRPKTIVECVDDSAIRTDKEASRLHGLGIIDEETSLGDYVRRGANYQLMGGSDMNLDGNSMIVGQEVVIDHEEDEEND 160 
WD40-rpts                                                                                      

Query      161 DSPMLDSKFVQNRTRTAFRRYPNDRLPDRLTIGDANGKYKCYMPDCLWKGGYRSLRMDHMKAIHPEWKMPSRFLLERISK 240 
WD40-rpts                                                                                      

Query      241 DGKYVNPEEHVPQYACQVKGCNWRGNFRASRSSHMRKVHPNEHAERKRNAPGYNSNGTYNCHFPLCQWRGWSRSTRSTHL 320 
WD40-rpts                                                                                      

Query      321 RKAHPEWRPDDNRVMTVLSCFYCKSSFHTYAQLADHTITHGGLALMISQSFDNKHHFSAWLQQMERVYSVTFERSEFGSD 400 
WD40-rpts                                                                                      

Query      401 PELQDLHNYVLHCDCVGGRGEQLATDSRAYIYQKHNFLKRRHPQLLTRNKNDCCVHLEVREDSEYGPIHVKGTLEHTGHR 480 
WD40-rpts                                                                                      

Query      481 FGTPLLRMSPMDRQIYSEVLSWKEQRDFQFMALDVVEKLNVFEGFTMDHYTTPRSVILMEPLHTNQFQSLREFIEAPSTS 560 
WD40-rpts                                                                                      

Query      561 TYQNPYFSVDFGDSPEQFSFGYMSDEMQKLWSKYAPGRTITIDSSPLEFGEVDLFQYSVIVTDENYIPKCAMIYVTTDNS 640 
WD40-rpts                                                                                      

Query      641 RAPHTILRQMKAVEPRPPTIFMVDPSQLWVELIQDLWPTDLDNPESEVTILISEWTLMDYWAAKTEELVKNEFDVFCIVT 720 
WD40-rpts                                                                                      

Query      721 ALRRMLRVEDAHQLYYTIVELFEAFFECGYDGLAEFFDAQLSDMEYFKRWGPLHRTTLTSHAHPTLGASFRILRDWYLNP 800 
WD40-rpts                                                        (_____________________________

Query      801 ANMDHDAPRVDQWFSHICQRIEDFNAITNTQTYTLRPLDPPHKFFYTTVEDEEGEEAEHENPFKNPQILMYDDDGDEVVV 880 
WD40-rpts      ___WD 1_______________________________)                                         

Query      881 EEEIIGHEIDGASELQGSELPDEEVIYETYEDYPEYGGHYDLEEEHKMHHNMRLEEEELQQHLHEQQKPEHLSHQTEELG 960 
WD40-rpts                                                                                      

Query      961 ELQDHHHHHHHHLDEDPEATAEGPSEIVEHDDEEEQEDLVDVEMVDDQHEQHEIPAKIPPHRQRLYQKLDPMPVISHELP 1040
WD40-rpts                                                                                      

Query     1041 RSPSRRIRIPTRKIQELDQESVLPPPPRRETTRSVVRSRKRRDRFAELRDCPPEVMRAIAAHAIAYDGRKKEQRPIVYVP 1120
WD40-rpts                                                                                      

Query     1121 RQAKMAMSSTPTAPTPPEDYDGPPGHQMTTILQHQRQAKQEEEEEQWSGEYDDELHEQEHDPATSSPPPSLLPHTGPSEI 1200
WD40-rpts                                                                                      

Query     1201 VHHEEEVHMMLPEEEADLMDDDDQQPCTSASMYR 1234
WD40-rpts                                        

1 WD40-repeats found in QUERY=F54C4.3a (Len=1234):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   771-839      3.46  257.56  0.02086       20.0%     -11.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  771-839    GPLHRTTLTSHAHPTLGASFRILRDWYLNPANMDHDAPRVDQWFSHICQRIEDFNAITNTQTYTLRPLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP---DGKRLVSGSEDG--------------------------TIKVWD