WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: F54B3.1b [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = F54B3.1b (Len=3563) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (F54B3.1b, Len=3563): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDTETKNLREAGEVFLFMHRIFRASRNLRAHWYIDHLGKAVSIEEVPQCSSYKPSKDPKDEYRQEMTVIGIVPAGGDGTE 80
WD40-rpts (_____________________WD 1__________________
Query 81 VVGDEQFIVTVRTKCTYISRYYRIVFVLDLSPSVVMADDESNCCLVDRIIPSLRNALRSSVKSFVIPGTNRIFRPQVHTS 160
WD40-rpts ___)
Query 161 ICLFTPFMKFEETFTLCQGVFVTESNVDMVIESVEIKFVDIYKRLFTFSRPILEMWGKLKRRHKHNKFDSLCESDSQSED 240
WD40-rpts
Query 241 CSRKVPSAENIHLSESSAASTSHKNDGDADRAMDGGNLMSIQRGIWSATERHEDQKQLSFASDKSYVAPDWSLIFMLRMG 320
WD40-rpts
Query 321 LLQIQMLPENTQSNLVIISDSVCGMPDEEALQNVLTQLRSYTVAFSFIQLQKKACTEPVFGHVGSSSLFYFMTMATFGTY 400
WD40-rpts
Query 401 LPRQMPQPPKDPLILSRTQEGQLVIKRTVEHDDIIDESKENINQFHRALICWSFQNGLNDNDYLLDTFAQINSDFLELQQ 480
WD40-rpts
Query 481 SHVDRHRRFVADYQATLNRMMYVRLREGFTLKSTVFVKNNTQVILTLRLAFRPLVFIDYIITSAWPVNKNVHQAVNVELV 560
WD40-rpts
Query 561 LEGPYNELKDLLTESNYLNPIRMNLIKSVIDGIIDADRLLLHIHSFDTKIAYFTIPPGVTKEYALFQQGDRSRQILPQLC 640
WD40-rpts
Query 641 IVKPDGVKTRGFVNFWKKMLEVDDSNWQKWVHTQTERSLLNLIHVPFEMFTTERILKFDCRYPLNAVLYSIKVRATFCLV 720
WD40-rpts
Query 721 ENQTYVTLVYATQNSKKPSYFFIRKVICNGPVAIIKTAFLGGVTSIERRRAVEAQRQRLINVTYGTILDEADLKKEARRY 800
WD40-rpts
Query 801 RYEANAAKFYMDPTKIFDKKSDPACTVFRRPLERMVVRYTHVPADLTTIVRAEEKTDDPDEIMLLTLHNTLAKSLACRRS 880
WD40-rpts
Query 881 VILLNTFQPGGAFIVRLLADFCQNVLMHKRMHQEGFRPAWTQNNAVSLLRQIYDSSGASLEQFIMFPAITIQPNIMNNPI 960
WD40-rpts
Query 961 LRRKSKHEIVKKDKFEDDDDEISKNAIPSRSAVETLAIVCEMWNEPEGGNPDDQLANMSAEQRLNEDLRFISVLFTLDKI 1040
WD40-rpts
Query 1041 LRHSGQCNEVFPSDDNSKGLCQPGTPGRMFPYEDSCRCTDIYELTGLPKKTPPSDNDMLTYKKLRPKSKRRTEKLKNDDD 1120
WD40-rpts
Query 1121 LEKEWVQEQRRWMDVPKEPTPGIFPIRYIRKRIEGDDEVLGELDEPYPYITEETVNTTISPVPTVTDIHAEAVSKFVTVY 1200
WD40-rpts
Query 1201 DNLFNMTNLVYHAQRKYLPLPHFVLGRNDSDIPLCNKRQLNALHWQLSRIADLTWIIDDTEHDIIWADLVKTVPEKERPP 1280
WD40-rpts
Query 1281 QTKLRVYVKALTARMAALMFAPVTDAFDVKSEIIPMFLMTIHETQIAHCYAQNAFDGNGIVNVPMSDVPERWDSGARFGW 1360
WD40-rpts
Query 1361 TPNNRNVFPEEATTFPSFCRHFEEEILPRIRMRAMYEAAREEIPLNEESLMDMSGEVDCLEFEMSEIPTALRKVCQHLGG 1440
WD40-rpts
Query 1441 EHPPPKDTICCEGSNIAYMFSKMLSKNFKKVEGTQNIFYLNPESMIEQKTKKSKKKQGRSSRTRGNSGMMYVDGTESITS 1520
WD40-rpts
Query 1521 LSEAGDERSLEGEHSGEFLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRPGSPPSSDYSDTESRTRADSATLG 1600
WD40-rpts
Query 1601 EIYEEYTGNNQPMFIQFNCSVNFDGRKKTDTFPINFLPTCIHELLPFIVGAPTDPEEIKNVEIVMELLVLTTQNLRPTMD 1680
WD40-rpts
Query 1681 ANEISTRLLGMAKSRVRNPYEFERHRRESYKREEEEEDEDPISTSDDDDDEDKEKKDTLFDLPPQERKVMTDLVRNVGVV 1760
WD40-rpts
Query 1761 LELEKILLESRVEKVDKKLLDNVKSYIDNACTTSGKVGHAETRRKPFILVDNSRQKIRKFMDLLDNRECGYLKIVRLEDT 1840
WD40-rpts
Query 1841 NMLYCRRINNQEIYESRKASEEDPEDLQAPRNIGPLSVADFWIIISVDYKDHQISVHFCQRYEHQHTAMLDQMWAGIRQE 1920
WD40-rpts
Query 1921 LRVLNQESLLEMMYIQRNVDKLLVPEHRKISQFDENDKHQSPPIVTPLRLAGKRGRKPTEIVPQDLYFYFAEGYFACPLQ 2000
WD40-rpts
Query 2001 RELWIAVPERIRNQGQLLHRNPLHIAFEKIKTPLLNYAVHNRANTFVYKDVDRNQIFYFQLHMDRDSYELAVKGTRTKLR 2080
WD40-rpts
Query 2081 RKQMETVEQMLETKICLTIFGITEPHTSIIETIWKSLHEKLDEQLLVEIMRGYSQNQEQPLSMNEISFLQPPEPGPQIRK 2160
WD40-rpts
Query 2161 FFSIPFIFEEYLSALLFYIGQHIEAINSISPAKVKEQGIFYNGEAFNRTPVAATWPARRKSFRKISDLEGDTGITMGVEA 2240
WD40-rpts
Query 2241 KEGNIIRAFSIDECPDSLEPLNSSLIFRSHPPIAGMLPQDYLLSSFYVYHILPARGVVDTGMALIEFRITKPDGQLISRF 2320
WD40-rpts
Query 2321 DQPSMNEQSHLLLVPNVPDDKSTVYRDIIKSHVHNAPKPEKSLCGFVEMIVWTKGDVVESAFEKMMHELIEMSMIDVITE 2400
WD40-rpts
Query 2401 FGYLNTTIVEEGMFTGTVSFTNRNSDVFLPGQDSTTSEPAKHLTKQSSASSVTASVDTRHHHSAATSHSGEIRRSLVHGP 2480
WD40-rpts (_________________WD 2_________________)
Query 2481 GSLDIGINPPPPPPPSHVHTKPSATARMSSIAKDIEQSLTQNDISLRRQDYMNRKNAYSIIKWLDYVESKQGETNSVVKQ 2560
WD40-rpts
Query 2561 RIRFEFQHASLPALFEIRNRLEVSLGGLHESDIRERVYLCGLRKPMENENGISLRESNLSIFGTHPHDGRFEVLTTDPFH 2640
WD40-rpts
Query 2641 AMTDDFGVDESQNQEEYILVSCIRNIFDGFGENMIRTTSQVDEMKQMFRNHLHGKYSPLVQSHMYAPRQRIMMAYLKGDF 2720
WD40-rpts
Query 2721 MTIYFYNYHYSIHKEAVDCTNKIVGFHNAKSRLLREIGLHKMGITHLSPFHTEPNNEYDYEVLIWTDPMTLISKEFPMDH 2800
WD40-rpts
Query 2801 KTPPQFMREPQCSNIFFRMYRQPDLQEIMGRSKTLFKSDCVKTMHYEQLLRWRSGLKTKLDFIQKVTKAHMEMIKKEVLI 2880
WD40-rpts
Query 2881 NECDLLLFLRPPKVAKKLGPPPTHTSSTSSVRHRHFDDDHHTEDNYSLTERTSKRASIFGESIKSQAIAESEIFKGKGEF 2960
WD40-rpts
Query 2961 LKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPLKEFVEIYEVQKAKMTKQLMKRKY 3040
WD40-rpts
Query 3041 SEKNVEIQISDIIIKNEERKRGEEMIKIKDEEEWSEDDSDIDDDDGLSIEDCGQSSRSTSESKTAVVGDENFQRTYGRVR 3120
WD40-rpts
Query 3121 RSWKLNPPVSPMPLDSRHNSQSSVMPMIKPSESGPIEKMFSFTLNAASKLSRRLSRRQPEKEPSIEKAEEALSDLAQSIN 3200
WD40-rpts
Query 3201 GDSTDLDEANMEPAISPIMFKHAEEFARYFTRKYGFIQFRVENRNRRSKALNRYTTTSNMFSDLPYLVFYKAYDGGVIFA 3280
WD40-rpts
Query 3281 DLKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYWKESKELHTAANQLKDSVCFMTFNFDYHLRAVATFLEAKANKRK 3360
WD40-rpts
Query 3361 CLFGASMNVFHLIERLLDYYQYDLILSKNLVAIKYLYLTREHNDIILTRMEEEEDLMLMKMENDPVIDQRYAGNPIEDAI 3440
WD40-rpts
Query 3441 FKITEGHLYKSKHPVTTIEMTGILSPQMSSPSSVKQCSRVVPSIKIRVHMDDVGGGGIGCDDDRLYWPPTQDREFIEDFE 3520
WD40-rpts
Query 3521 GKQRRRLLENMSKYGTEHVPTPWEDSCVRRTVREMMSQRTSTF 3563
WD40-rpts
 2 WD40-repeats found in QUERY=F54B3.1b (Len=3563): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 37-84 2.93 235.89 0.04046 22.5% -6.44 WD 2: Seg 53 2401-2440 3.01 238.86 0.03696 17.5% 21.57Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 37-84 LGKAVSIEEVPQCSSYKPSKDPKDEYRQEMTVIGIVPAGGDGTEVVGD WD 2 2401-2440 FGYLNTTIVEEGMFTGTVSFTN--------RNSDVFLPGQDSTTSEPA WD40 Template TGECLRTLSGHTSGVTSVSFSP--------DGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |