Input parameters:

  Query = F53H2.3a (Len=637)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F53H2.3a, Len=637):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRREIGWKGGCREEMKEEEEEKGRFDTHRWLAVFVSVMRHFSLVLAENCKTRFFKAFAILHFSCLLSESAQSHRDHGPSS 80  
WD40-rpts                                                                                      

Query       81 IHWTKGQLTSISYSLSVPPPAALSLKTGGAPSSSCALFGLAQRAQRAEELSGIEKFKITHSTTTSTHQSTFEMRQNEPPG 160 
WD40-rpts                                                        (_____________________________

Query      161 MPRGTKTLAWFMDRTGIFEKQQQQMMQVRRNSSSDDSKSTTPSAQQQFQQQQQQQQKKQKRYRKTLSQQGTTRKEAFGGS 240 
WD40-rpts      __________________WD 1______________________________________________)           

Query      241 QAMSESSEEGTAIISTALTSSGAPSCATPGISAATTTANGNNNEEYWFYDVATDGYYYEQNGAKGWRRRQPNQAVHKSAG 320 
WD40-rpts                                                                                      

Query      321 KDSEVAHMNVNGPSKYNQLLAAQAAAAQAAFLQQAFQLQAQQQASQAPQGAHAPPPPQQQQQPTMRYYDANSDGFFYEMA 400 
WD40-rpts                                                                                      

Query      401 SVDGWKRRQPNKPVSASVPAGITRPYSQRPAAQQIPQEVAAPYHPSTAAPTSGASSYGAALARGQFPRNTVKHDEKCAQN 480 
WD40-rpts                                                                                      

Query      481 AQQQQPRGDSTSSSQCGDTFAELFSSSDPVYIPRPSALNLEQKAVSPSENSTAALFDAVLADFGGFKATSANLNPLLPGI 560 
WD40-rpts                                                                                      

Query      561 SSSQSPMKGESWNSFRSCSLFSPIKPSKRAPLSSNGLQTQASAAAMEDFDDDSTMKMLIQDLDKLWANSPVSGLNQA 637 
WD40-rpts                                                                                   

1 WD40-repeats found in QUERY=F53H2.3a (Len=637):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   131-229      2.79  229.96  0.04844       30.0%      7.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  131-229    SGIEKFKITHSTTTSTHQSTFEMRQNEPPGMPRGTKTLAWFMDRTGIFEKQQQQMMQVRRNSSSDDSKSTTPSAQQQFQQQQQQQQKKQKRYRKTLSQQ

   WD40 Template    TGECL------RTLSGHTSGVTSVSFSPDG-----KRLV-----SG-----------------SEDGTIKV--------------------------WD