Input parameters:

  Query = F53C11.8 (Len=388)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F53C11.8, Len=388):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATNGHAVNGEAHVMQQVAQQPAPPGPLAPQGIGRQNEIVIGGRDRRCEIYKFTSDQQLYASAWSNKNDIKFRLAVGTVS 80  
WD40-rpts        (_________________WD 1_________________)                                      

Query       81 DVSVNPCAANKVSIVQLKDETGELVETASFPMEFPANAVGFIPDPDNVYPDLIATTSDCLRLWRVVDGKVHPDAVMINNT 160 
WD40-rpts                                                                                  (___

Query      161 NSQYGSALTSFDWNELEPRYIGVSSVDTTCTIYDVEVGCAIGQTKPTAPFTLKTQLIAHDKPVHDIEFAKINGGRDHFAT 240 
WD40-rpts      _____________WD 2________________)               (__________________WD 3________

Query      241 VGADGSARMFDLRHLNHSTIVYEDPNKEKLQRLSWNKQEPYFMALFAENSQEVQILDIRMPCNILCRLRNHTGPVNGIAW 320 
WD40-rpts      __________)                                     (________________________WD 4___

Query      321 APHSPHHICTAGDDSQALIWDLQQVPRPVDDPILAYSAGGEVNQIHWGPVHSNWIAICFNKTLEILRV 388 
WD40-rpts      ____________________)(____________________WD 5____________________) 

5 WD40-repeats found in QUERY=F53C11.8 (Len=388):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       3.87  274.52  0.01237       15.0%      4.20
  WD 2:  Seg 12   157-194      5.12  326.20  0.00250       22.5%     43.04
  WD 3:  Seg 15   210-251      4.09  283.65  0.00933       17.5%     50.49
  WD 4:  Seg 22   289-341      5.99  361.93  0.00082       22.5%     49.04
  WD 5:  Seg 26   342-387      3.31  251.49  0.02513       10.0%     38.81

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     TNG------------HAV------NGEAHVMQQVAQQPAP-PG---PLAPQGIGRQNEIVIG
   WD 2  157-194    ---------------INN------TNSQYGSALTSFDWNELEP---RYIGVSSVDTTCTIYD
   WD 3  210-251    -FT------------LKT------QLIAHDKPVHDIEFAK-INGGRDHFATVGADGSARMFD
   WD 4  289-341    NSQEVQILDIRMPCNILC------RLRNHTGPVNGIAWAPHSP---HHICTAGDDSQALIWD
   WD 5  342-387    LQQ------------VPRPVDDPILAYSAGGEVNQIHWGP-VH---SNWIAICFNKTLEILR

   WD40 Template    TGE------------CLR------TLSGHTSGVTSVSFSP-DG---KRLVSGSEDGTIKVWD