Input parameters:

  Query = F53C11.7 (Len=478)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F53C11.7, Len=478):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIDQSQAAPSSSTSSSHLMHHHSNNYPSYTNPSASSSNHSNMGHPNASTGQTSAVQRMDPFNQIPSELYGSASSTSIAAS 80  
WD40-rpts                                                                                      

Query       81 TRQPSSQSQPSQQFRQMPADLGASTSTMHSVAPIDIYDNYGNASTSDLRRSSVRGDPRRKEIYAYNAPFTLFSHGWSAAT 160 
WD40-rpts                                                                                      

Query      161 DPSRKFRLAVSSFIEEYSNKIHIVQLDEEAGELVHRSTFDHPYPATKIMWIPDQKGTFPDLLATSGDYLRLWRIGTDNNA 240 
WD40-rpts                                (_____________________WD 1____________________)(______

Query      241 CIESLLNTNRTAEYCAPLTSFDWNELDMNLIGTSSIDTTCTVWQLETGQAIGTTRPTAAIDGTVRTQLIAHDKEVFDISF 320 
WD40-rpts      _________________WD 2______________________)                     (______________

Query      321 SRGSAQIFASVGADGSLRLFDLRRLEHSTIMYEDPQRQPLLRLAWNRNDHNYIATFGQDSKEVLILDLRLPCTPVARLRN 400 
WD40-rpts      _WD 3_______________)                                                  (________

Query      401 HEATINGLSWAPHSGSHICTAGDDYQALIWDVHEMPKPINDPILAYRAQAEVNQIHWSSSFPDWISICSDNKLEILRV 478 
WD40-rpts      _________WD 4_________________)(____________________WD 5____________________) 

5 WD40-repeats found in QUERY=F53C11.7 (Len=478):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   187-233      3.15  244.61  0.03102       20.0%     33.95
  WD 2:  Seg  9   234-284      4.70  308.77  0.00429       22.5%     40.77
  WD 3:  Seg 12   306-341      5.18  328.51  0.00233       27.5%     47.99
  WD 4:  Seg 19   392-431      6.46  381.62  0.00045       20.0%     48.03
  WD 5:  Seg 23   432-477      3.14  244.55  0.03108       12.5%     32.01

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  187-233    DEE----------AGELVHRSTF------DHPYPATKIMWIP-DQKGTFPDLLATSGDYLRLWR
   WD 2  234-284    IGTDNNACIESLLN----TNRTA------EYCAPLTSFDWNELDMNLIGT---SSIDTTCTVWQ
   WD 3  306-341    T-------------------QLI------AHDKEVFDISFSRGSAQIFAS---VGADGSLRLFD
   WD 4  392-431    -CT----------P----VARLR------NHEATINGLSWAPHSGSHICT---AGDDYQALIWD
   WD 5  432-477    VHE----------M----PKPINDPILAYRAQAEVNQIHWSS-SFPDWIS---ICSDNKLEILR

   WD40 Template    TGE----------C----LRTLS------GHTSGVTSVSFSP-DGKRLVS---GSEDGTIKVWD