Input parameters:

  Query = F53C11.4 (Len=527)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F53C11.4, Len=527):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFNIENESVVCQLYHRTKHNNSVNVVCELSEKIGSPQLENGEWVVPNDVTGLNAKKSKVVKIRFHPSVSKLSSEGSALH 80  
WD40-rpts                                                    (_________________________________

Query       81 QAACESALKYLDLLLDDSDWTRKTNHDDDLFGKQIDKIIEYLSEMDKIIEIDTSKIGLTLLHDEFFDEFVKLISCKSISS 160 
WD40-rpts      _______WD 1________________________________________)                            

Query      161 HLHTIISDDDDAHQSAQIVFEKDGRSRQIISIDVDAGYLKSSESGQECVFDVSKTCFTWVLPRHEDDFENSPPTVSHKLD 240 
WD40-rpts                                                                                      

Query      241 CYMWIDEEKQEMPVYSPCASVFHHLDKLTASLSACGSPTFNGVLQRVPQVLAVDAIIGLDKSEAPHLHKFIQNITQAPLM 320 
WD40-rpts                                                                                      

Query      321 VHTDFDNESLDCYSDSECKLTISPTDSIDSGVSLTSPTRQGSFDEDDGDDELTATSPGMRTRSRSESCSSLKGILKWPRR 400 
WD40-rpts                                                                                      

Query      401 PNTMSRLAAKPYLIRSYSECHHDESSFPPLIPLRFSEDDEDAFHETDDSSSDCCVLPAAPRKKSVSFSERIEQTRLFNSN 480 
WD40-rpts                                                                                      

Query      481 TSINAQKRKNLKKNEKKKKRENSLASSIESIHEETGRISPAARHQTV 527 
WD40-rpts                                                     

1 WD40-repeats found in QUERY=F53C11.4 (Len=527):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    47-132      3.71  267.75  0.01524       25.0%     24.78

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-132    PNDVTG-LNAKKSKVVKIRFHPSVSKLSSEGSALHQAACESALKYLDLLLDDSDWTRKTNHDDDLFGKQIDKIIEYLSEMDKIIEID

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS------------------------------EDG-----------------TIKVWD