Input parameters:

  Query = F52C9.1 (Len=1422)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F52C9.1, Len=1422):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPEEEFEWNESKLNALSEILTQWAPHDELKLENVILEAKMAWIHESTDAVALEKEFEKLLNTSFDPLMDYEEHQRVKNGV 80  
WD40-rpts                                                                                      

Query       81 CSPAKSTKLDWITKWANIAEKLSISHINCSKAPHKTINFQRLQILPNMTSILAIAHTEADNVILIYGHTKEGIDFQTVLR 160 
WD40-rpts                                                                                      

Query      161 HSYSNIPDGSLQTIHFLTKNLLDLYSQLFSRKITAEFKTRHFRCLPSFWLQYDVLAPIFEQFRAPRAPRIPLDEATSNWA 240 
WD40-rpts                                                                                      

Query      241 NRKWENYQYLTYLNDITGRVRGEVHNHPIFPWVCDFSEENGGFRQLNRTKYRLCKGDDQLREMYSREPSHHVPELLSDIG 320 
WD40-rpts                                                                                      

Query      321 YMVYRARVEPKDNLCRHVRRKWVPEEYPSTMSRMYQWTPDECIPEFYDDPSIFNSCHPDMADLRFPEFVSSPQEFIEWHR 400 
WD40-rpts                                                                                      

Query      401 KMLEHEEVSMNLHRWIDLVFGFNLAIDNSKNALNLHLCFVEKNRRGLRTTGMVQLFNRPHPIRMPLNYVCYLALDYKSYQ 480 
WD40-rpts                                                                                      

Query      481 PTLRCLVEVRNVYFVSRYKWCKSRILDNDPKLDNYHLKMESFGFGMTSEHRKEPEVEPDEDSHYQIYQKIKKVRRLRHNT 560 
WD40-rpts                                                                                      

Query      561 YFSSMVSAMEVMAQIVLAPHLAGRFDDPDHIRRCIQLYSYRIPANYRRLFDFLFNTEQDFPDCDEFSFFVSVRLNIPTKI 640 
WD40-rpts                                                                                      

Query      641 LNFSEEFGKCVSLHILRKLDVIPPFSKRSQLIILKEVESLKKSIRLCDHMEQCVVAAFQQLLEDEEACIQSVHRLMPVIT 720 
WD40-rpts                                                                                      

Query      721 RSLSQSALEDLINPMIELIQCETSVKLLDRRFLMHVSICYGTHTFLDLFLPPIVEACASMNCDRSVVAKESIMWLAKRYG 800 
WD40-rpts                                                                                      

Query      801 PVICAKFISSNVLRIMASCYEAFEMVGLEQQPKAVFNVVLQGDETCSRIESLLSEIVLTYSVTFITVQFLPFCVDLIEQF 880 
WD40-rpts                                                                                      

Query      881 HKRSSVQLEPGLVSVFRIVELSIRSMSDHQLMNYLEEFIIQKVIYRVLTILLDASFQFSSMRVRIIIICKVCQLLHSITQ 960 
WD40-rpts                                                                                      

Query      961 KIGTENTRIYANQPFKLMFSTFSEIYETDEELRINLRKRPSENTLFEVPLWMVEDVVDKFAKEWGVPFLSSFCDDPAFLI 1040
WD40-rpts                                                                                      

Query     1041 PFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPVNSVNSLGGLSFCDSGSLSAVWCARVSAAVCGVD 1120
WD40-rpts                                  (______________________WD 1______________________)  

Query     1121 NYRFDHLSLCNYTGHQEKIRKLAAISNENSFVSASSDKTVKLWSIKPELDEIGCQWTYQKHTRPVHDITILADNSIASTD 1200
WD40-rpts           (_________________WD 2________________)       (_______________WD 3_________

Query     1201 GVLHVWDPFRTTLLAQMEWDSKEGSGGNIMRVENVDRHILSAICSLHSTVKLFDSRVGGWTCELKVSPGPGLTRAITVRD 1280
WD40-rpts      ______)          (________________WD 4_______________)     (_________________WD 

Query     1281 KGNKMAVALSNGTLAILDARNGKINALAQTNSTHTVSVNWLSDTRLLVCDADECGIFLETNPRAHIVRKLQDPVSAACLT 1360
WD40-rpts      5________________)   (_________________WD 6________________)   (______________WD

Query     1361 DNSLVTLQNGTILRVYRNSGELQIETKIRPDELPGTPTAVLPLPLNCSYLIGSSHGAIRLMC 1422
WD40-rpts       7______________)(____________________WD 8___________________)

8 WD40-repeats found in QUERY=F52C9.1 (Len=1422):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21  1069-1118     4.30  292.39  0.00712       12.5%     29.47
  WD 2:  Seg 26  1126-1164     8.19  452.99  4.9e-05       25.0%     45.73
  WD 3:  Seg 29  1172-1207     5.61  346.32  0.00134       30.0%     38.42
  WD 4:  Seg 33  1218-1254     5.37  336.57  0.00181       15.0%     43.20
  WD 5:  Seg 36  1260-1298     6.10  366.62  0.00071       15.0%     55.37
  WD 6:  Seg 40  1302-1340     6.37  377.86  0.00050       17.5%     52.39
  WD 7:  Seg 44  1344-1377     3.60  263.42  0.01742       15.0%     33.46
  WD 8:  Seg 48  1378-1422     6.57  386.22  0.00039       20.0%     42.32

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1069-1118   LG-----GMSSGNRLFSLSASSPVNSVNSLGGLSFCDSGSLSAVWCARVSAAVCG
   WD 2 1126-1164   -H-----L----------SLCNYTGHQEKIRKLAAISNENSFVSASSDKTVKLWS
   WD 3 1172-1207   -I-----G----------CQWTYQKHTRPVHDITILADNS---IASTDGVLHVWD
   WD 4 1218-1254   EW-----D-------------SKEGSGGNIMRVENVDRHILSAICSLHSTVKLFD
   WD 5 1260-1298   -W-----T----------CELKVSPGPGLTRAITVRDKGNKMAVALSNGTLAILD
   WD 6 1302-1340   -G-----K----------INALAQTNSTHTVSVNWLSDTRLLVCDADECGIFLET
   WD 7 1344-1377   -A-----H----------IVRKLQDPVSAA-----CLTDNSLVTLQNGTILRVYR
   WD 8 1378-1422   NSGELQIE----------TKIRPDELPGTPTAVLPLPLNCSYLIGSSHGAIRLMC

   WD40 Template    TG-----E----------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD