Input parameters:

  Query = F49E2.1a (Len=389)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F49E2.1a, Len=389):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSCRAGKKLFQWSRVKSSTEEIVKQLTVPLREHAEPILTLTPEQKREAVRLKIQEIEHTKGQPPFFDMFMREHTYLRISL 80  
WD40-rpts                                                                                      

Query       81 TEKCNFRCLYCMPAEGVPLKPKDKMLSNSEVLRLVKLFAAHGVDKVRLTGGEPTIRKDIVHIVEGISSTPGIKEVGITTN 160 
WD40-rpts                                              (_______________________________________

Query      161 GLVLQRFLPQLRDAGLTKINISIDSLDREKFAKMTRRDGFDKVWKAIELARGYYPKVKLNVVVLKHQNENEVVDFVNLTK 240 
WD40-rpts      ____WD 1___________________________________________)                            

Query      241 DRNLDVRFIEFMPFGGNEFKNDNFIGYREMLNLIVDKYGDGVIRLSDSPNDTTKAYKIDGFQGQFGFITSMSDHFCNTCN 320 
WD40-rpts                                                                                      

Query      321 RLRITADGNLKVCLHGNSEVSLRDRIRCGDSDEQLSEVIQKAVNNKKARHAGMDALKNLPNRPMILIGG 389 
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=F49E2.1a (Len=389):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   121-212      2.83  231.43  0.04633       15.0%      6.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-212    HGVDKVRLTGGEPTIRKDIVHIVEGISSTPGIKEVGITTNGLVLQRFLPQLRDAGLTKINISIDSLDREKFAKMTRRDGFDKVWKAIELARG

   WD40 Template    TGECLRTLSGHTSGVTSV-----------------SFSPD--------------GKRLVSGSEDGTI--------KVWD-------------