Input parameters:

  Query = F49D11.10 (Len=727)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F49D11.10, Len=727):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METLENIEVTLVGQPYSNLVISPNNRILATTTGASCEVLFSDKKGNDARRVIKHDCDVIAVFFHSNERLVTVTENGEVSE 80  
WD40-rpts       (_________________WD 1_________________)   (_________________WD 2______________

Query       81 FEAQEKDFEKLVSRRVTAFPVVAAFAQKPKNAEEEKELELWLVVKKSDSKKQKNPSKFDICVTGANGSIEKVLEIPSNIR 160 
WD40-rpts      ___)(________________WD 3________________)                                 (____

Query      161 KEQIVISDRIVSYCQGLEITSIILNDSDFSIVKETKYTSKNTGGHDIDVIHQFDRLSANGNYLVAAISDGRVLEWSNLKS 240 
WD40-rpts      _____________WD 4_________________)    (________________WD 5_______________)    

Query      241 SGVSDTHHRIHWNKVGCHVAVTQFGNVLTAGAECALARHSKGQKEPTLLPRLAAPVTGLVISEDSSTCALVMEDNSIHTV 320 
WD40-rpts       (_________________WD 6________________)(__________________WD 7_________________

Query      321 LLATMALKSSISTLEYCPRSLNTVFCCDRLRPRSIVMNAKPGTIQWFDPVTITTESKMHVTLENTIDGDMTSRGIRSAFR 400 
WD40-rpts      )   (___________________WD 8___________________)                   (____________

Query      401 DVLCVSFTSTLAATIEKFVHFDGENHVRFWQRIGNATNTKLVASVAVPNDVVFVATCQTSTSSRFANTIVTASTSGTISV 480 
WD40-rpts      _______WD 9___________________)               (_______________WD10______________

Query      481 WDYTEKDVREDLERSRNWQEAEIRSISNIQADGKFVSAHGQHAVLWNVKNMKIIDVLSCSDDIISVDFAADGRHLIISTK 560 
WD40-rpts      _)                                               (________________WD11__________

Query      561 KGVVCWDTLCLLVVWKIQQAVGCVVNSIGCFAFEGAQVMRFDAETGRVLETIQFSTNIDELVVIQQRAHALVYVAKTAKG 640 
WD40-rpts      ______)                           (_________________WD12_________________)      

Query      641 IICHRPAHIKNSGRSGEIAVPQTPFQQLGSKSTAGPSTVTSDQAFVRQPRPEAARLFSGPVHQLPPISFIAPLFIEKSLL 720 
WD40-rpts            (_________________WD13________________)                                   

Query      721 PPPVRGV 727 
WD40-rpts             

13 WD40-repeats found in QUERY=F49D11.10 (Len=727):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       5.15  327.43  0.00241        7.5%     51.72
  WD 2:  Seg  5    45-84       5.14  326.83  0.00245       17.5%     44.43
  WD 3:  Seg  9    85-122      3.42  256.01  0.02187        7.5%     24.64
  WD 4:  Seg 13   156-195      4.42  297.34  0.00611        7.5%     34.96
  WD 5:  Seg 17   200-236      5.22  330.28  0.00220       17.5%     39.14
  WD 6:  Seg 20   242-280      6.56  385.56  0.00040        7.5%     50.27
  WD 7:  Seg 24   281-321      7.25  414.20  0.00016       22.5%     50.50
  WD 8:  Seg 27   325-368      4.98  320.17  0.00301       17.5%     34.28
  WD 9:  Seg 32   388-431      7.10  407.85  0.00020       17.5%     34.57
  WD10:  Seg 36   447-482      6.00  362.42  0.00081       22.5%     26.61
  WD11:  Seg 42   530-567      4.69  308.37  0.00434       22.5%     53.10
  WD12:  Seg 47   595-634      5.18  328.63  0.00232       15.0%     56.86
  WD13:  Seg 50   647-685      2.81  230.93  0.04704       12.5%     -0.39

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     ETL-ENIEVTLVGQPYSNLVI-----SPN----NRIL-ATTTGASCEVLFS
   WD 2   45-84     -GN-DARRVIKHDCDVIAVFF-----HSN----ERLVTVTENGEVSEFEAQ
   WD 3   85-122    EKD-FEKLVSRRV--TAFPVV-----AAF----AQKP-KNAEEEKELELWL
   WD 4  156-195    PSN-IRKEQIVISDRIVSYCQ-----GLE----ITSI-ILNDSDFSIVKET
   WD 5  200-236    KNT-GGHDID---VIHQFDRL-----SAN----GNYL-VAAISDGRVLEWS
   WD 6  242-280    -GV-SDTHHRIHWNKVGCHVA-----VTQ----FGNV-LTAGAECALARHS
   WD 7  281-321    KGQKEPTLLPRLAAPVTGLVI-----SED----SSTC-ALVMEDNSIHTVL
   WD 8  325-368    -MA-LKSSISTLEYCPRSLNTVFCCDRLR----PRSI-VMNAKPGTIQWFD
   WD 9  388-431    GDM-TSRGIRSAFRDVLCVSF-----TSTLAATIEKF-VHFDGENHVRFWQ
   WD10  447-482    VPN-DV----VFVATCQTSTS-----SRF----ANTI-VTASTSGTISVWD
   WD11  530-567    -NM-KIIDVLSCSDDIISVDF-----AAD----GRHL-IISTKKG-VVCWD
   WD12  595-634    GAQ-VMRFDAETGRVLETIQF-----STN----IDEL-VVIQQRAHALVYV
   WD13  647-685    -AH-IKNSGRSGEIAVPQTPF-----QQL----GSKS-TAGPSTVTSDQAF

   WD40 Template    TGE-CLRTLSGHTSGVTSVSF-----SPD----GKRL-VSGSEDGTIKVWD