Input parameters:

  Query = F48E8.4 (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F48E8.4, Len=905):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIIYFLQLFLLPSTTATAGVFDLAEYRRVSYDANIGENFLWFAPELDIRKVTASNIDDLEKRIVNRIPDDSTEQNLMFVT 80  
WD40-rpts                                                                                      

Query       81 SKGGQKFACSLPDVEDVKKDKPKSSKNPKIYGDALAASFYVDKCVKLRGNHWWSYILCRGQTIEQVHGEPGQEGYVKNIL 160 
WD40-rpts                                                                                      

Query      161 GLFDGSLKMPSYQESTDDRLLFVEETYTSGTFCDLEEYREPRMTSVRYECDAQLSTNEVYISSVVEVKPCQYLMIVKVGT 240 
WD40-rpts                                                                                      

Query      241 LCRYPEFLPASQSNTKKIGCQPFLRKEDVRQLLERQLEEKQKAEESQRVLTVKKRKFQRAAERFNAMTKSQRNLHIPDVV 320 
WD40-rpts                                                                                      

Query      321 KRINAEMDYHAAHFNLLVAGLELEGKPITQKKRDYMWKLFSTADISDYIFYSDYDTVNDENRGHLWYYFHDPSWPRNQFP 400 
WD40-rpts                                                                                      

Query      401 KDIMATAVQNGYLSEVQKNLKGTQYRFGDNDELVEGLTHFLKTGEIDLQSNLVIPAMDIYDEMVFIGVRDQPYKWLYDLY 480 
WD40-rpts                          (______________________________________________WD 1_________

Query      481 EFYHEERDLVAGSGLRAQDVIEGMLHKILKPKYKSWFPMGNLARNSLVILLDEVWEDIIELSTNGLESELLDSSSPNYKA 560 
WD40-rpts      ____________________________________)                                           

Query      561 IYDMVDIGNASPEQLKTKNGKNLKFTVSVSAQRDLYEIEAEFQQLLTPIYKLLSIQWFQCRRPNYFHVHPPSEEHLEPSD 640 
WD40-rpts                                                                                      

Query      641 TTEDFIFHMNLARDMSRFARLMTEVFVVKIQDFTKWRNDKPIAERFVEDFIVWPMPPHATTDANENAFINLHKDLGPQLI 720 
WD40-rpts                                                                                      

Query      721 LEVKERIWNSKVEKYRTEYWTKDYKMRRQAQSMQGLMKDLLSMKDDKDAFVSVGSATSTTTKQASFDERLLKMMSESDLD 800 
WD40-rpts                                                                                      

Query      801 SSELLESLKNAAGVEEKVEFFDMEDMNQVLDMLDKAGLSKKAEVQIKMFDGDGNEIKSDELDSVTRNLLDVVDATKRFKD 880 
WD40-rpts                                                                                      

Query      881 VEKAYSTKIFDDSSENLDDDEENRD 905 
WD40-rpts                               

1 WD40-repeats found in QUERY=F48E8.4 (Len=905):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   421-517      2.84  232.15  0.04533       27.5%      7.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  421-517    KGTQYRFGDNDELVEGLTHFLKTGEIDLQSNLVIPAMDIYDEMVFIGVRDQPYKWLYDLYEFYHEERDLVAGSGLRAQDVIEGMLHKILKPKYKSWF

   WD40 Template    TGECLRTLSGHT-------------SGVTSVSFSP--------------DGKR---------------LVSGSEDG---------------TIKVWD