Input parameters:

  Query = F48C11.2a (Len=688)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F48C11.2a, Len=688):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRILCAFPIQEAAGATCPCSGITVNGTDQEHCWQIQSRSEATWGSADDACVAVGGHLGHPLDINYEEILNYVQKQSSLPV 80  
WD40-rpts                                                                                      

Query       81 LTGIVAGNTEIPIYGAICQSNNFYEVVANTTGFSNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDRPLQKQDYCSIIA 160 
WD40-rpts                                  (_________________WD 1_________________)            

Query      161 NCSSTTTFLSTTTPVSSTTSNISLTSSSTQSYSSSTAGATSSLFTIKVTQSTTAAGNGQGGSGSGSATTTCKCSAGDVSA 240 
WD40-rpts                                                                                      

Query      241 TTAASACSEKSGCLKNQWKIFGMCVDWRAMLALLLIGLLLFLCCCICHCCMHACMFCTPGKREKEDHEMVLIFYCFIIRD 320 
WD40-rpts                                                                                      

Query      321 PILPNRSVVAPIPIVAPGKMDYDVEKSEAVILPPPAIQPEPVYITVPEKHESVYGFHTKEIIHVMPEKPTTREIGTMTDP 400 
WD40-rpts                                                                                      

Query      401 MDTELSTIMPVPVAAPVMKRKKVVKKPKKMFIPATEDPIEEDLAADIPIEMPESPGARSVAPLGDVVEPAPMIPLNFSRN 480 
WD40-rpts                                                                                      

Query      481 PKPMMPEPQSHDDIPLPVNKSRNTVPPPVMQQKPNNASNNEEFDPSGLRSPPIPAGKPNNGTPKRMTFSPIADESEEENG 560 
WD40-rpts                                                                                      

Query      561 ARIPSPPRERRASGGRPGNNDGPNLSPNAALDPHPTLKNQRLNEMPSPTPANAPVPSKSPVSGASNNPFANLGGPSPAPA 640 
WD40-rpts                                                                                      

Query      641 ADGAGRAPQDDVGMRAARGRLGGAVRGGGGGGEAPNGWKPWAKGGARR 688 
WD40-rpts                                                      

1 WD40-repeats found in QUERY=F48C11.2a (Len=688):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   109-148      2.80  230.27  0.04799       15.0%     14.19

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-148    NTTGFSNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD