Input parameters:

  Query = F47G4.4 (Len=722)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F47G4.4, Len=722):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIEVVSALPHSTVHSAVLSRRHRSVICAGPYEVLPLEGCSEPLPSTSTLSELPIECLRLSTDERTIGAATNAILKVADI 80  
WD40-rpts       (________________WD 1________________)(_________________WD 2_________________) 

Query       81 ITGHEVRNLTGHTLPITSLAASKFNPYCWYTGSSDCDWTQWDTRMNPSKIFGSKTPGVVRSIALSPGDRYVAVGTDETIQ 160 
WD40-rpts        (_________________WD 3_________________)   (________________WD 4______________

Query      161 IFDARQREFIKTFNCSGHALELHPSDVLLSSVGHDRIVRFFCLETFEMISQSDPFLDDIQASAFDTHVMIAATNDSINLL 240 
WD40-rpts      __)        (_____________WD 5____________)   (________________WD 6______________

Query      241 TWEPCCDILTTVPLKNVEKVVNVNANGLDLDFICIGDNTERLEMRTYAIEELLSYSPSHELCGSIYEEDEDVDNSPIDEV 320 
WD40-rpts      __)(___________________WD 7__________________)                                  

Query      321 KALPELTELSNLPPRSPGLSCEETETSASPVNSSSSHSSPTSPVKPAPVKHRSASQKLPGKSTKTLNPKPAGSTRSVTPV 400 
WD40-rpts                                                                                      

Query      401 STKPPRTFGTAKSVIVSSKPSLSGYNNRANPSPSMSDLRTTKSMAGSTTSLLSERAPKKRSTSSRRNQEPITITYIGRPR 480 
WD40-rpts                      (________________WD 8________________)                          

Query      481 TPSEGDVASTVSSSTSRNRRPSPSVAKKTSPPSIYAITSSPAKRASSTASGPTARRQNSTSSVTSTTSAKTPVGVWGACI 560 
WD40-rpts                                                                                      

Query      561 ETVHDIGIVAKKENRNIRRLKMLTSRRTSNVDIPPEVCSDEQLVLTATRILSRRNDWSLNSCHAYLPVIIDNIASVDVTN 640 
WD40-rpts                                                                                      

Query      641 RAIALEGLAAIADTLGERLVKFASMNSHRIGVDVAAEERAEKAKACVQHLRSLVKKRDWYYKQLDEPSILKLDPILELLK 720 
WD40-rpts                                                                                      

Query      721 KI 722 
WD40-rpts        

8 WD40-repeats found in QUERY=F47G4.4 (Len=722):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-39       5.46  340.26  0.00162       15.0%     47.92
  WD 2:  Seg  5    40-79       6.53  384.50  0.00041       17.5%     44.80
  WD 3:  Seg  8    83-122      8.36  460.07  3.9e-05       35.0%     51.25
  WD 4:  Seg 12   126-163      7.68  431.92  9.4e-05       25.0%     52.35
  WD 5:  Seg 16   172-202      5.27  332.56  0.00205       15.0%     39.41
  WD 6:  Seg 19   206-243      4.22  288.93  0.00792       12.5%     53.46
  WD 7:  Seg 23   244-286      4.53  301.93  0.00530       12.5%     39.57
  WD 8:  Seg 29   417-454      4.52  301.39  0.00539       15.0%     -10.30

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-39     KIE-VVSA---LPHST--VHSAVLSRRHRS-VICAGPYEV-LPLEG
   WD 2   40-79     CSEPLPST---STLSELPIECLRLSTDERT-IGAAT-NAI-LKVAD
   WD 3   83-122    -GH-EVRN---LTGHTLPITSLAASKFNPYCWYTGSSDCD-WTQWD
   WD 4  126-163    -NP-SKIF---GSKTPGVVRSIALSPGDRY-VAVGT-DET-IQIFD
   WD 5  172-202    TFN-C------------SGHALELHPSDVL-LSSVGHDRI-VRFFC
   WD 6  206-243    -FE-MISQ---SDPFLDDIQASAF--DTHV-MIAATNDSINLLTWE
   WD 7  244-286    PCC-DILTTVPLKNVEKVVNVNANGLDLDF-ICIGDNTER-LEMRT
   WD 8  417-454    --S-SKPS---LSGYNNRANPSPSMSDLRT-TKSMAGSTT-SLLSE

   WD40 Template    TGE-CLRT---LSGHTSGVTSVSFSPDGKR-LVSGSEDGT-IKVWD