Input parameters:

  Query = F47G3.1 (Len=886)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F47G3.1, Len=886):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYSLIVPPTRFIILIACILASIQLLVQCSPISTSYRTLLYGEKLKGFLTISPADENGDTYIVSFDIKEKPNDTLVWAVHT 80  
WD40-rpts                                                                                      

Query       81 SSAPYDMAVMTDNCRRVKKSPPVVKNMPVTDSTIAGDGLAGNTLVISGDNSEVLACATVIIPGKELMHASFHQEPIEGHV 160 
WD40-rpts                                                                                      

Query      161 HIIPIKNNAVRLVPDLKYMPKYDYVEPEKKIMTWAFVDSCTALNDSTKLTDYSEVGVDSRATFVFTLPENYTLESLALYR 240 
WD40-rpts                                                                                      

Query      241 EDKIFACADIVNVEPRILKSLGVTLRQTHYFEPVIGLKSPPKELHIRDDCLDISTEIVHKNYLSYYPSVNIFGSESIMLK 320 
WD40-rpts                                                                                   (__

Query      321 SLVLNNSCNALRPQFARPAAIANFIHPVIGRIVLVDTDDKILLTGEIRNIFDEMSTRATVLISNKTAESTSCAHTTCETC 400 
WD40-rpts      _____________________________WD 1______________________________)                

Query      401 HKVENAAVVVGKNEKAVTMTGVFNWFNISDMKSAIIDLEWMKVCANLTVLPSGALTMHAMVKRVAPFSSATVASLVALEY 480 
WD40-rpts                                                                                      

Query      481 PANNYTEILINKKQKFSDVQAHFRPLDRSITSGPPCGEQNLGGVTKLPWVEELKKNFMSHENDSSVIFDERFVTGVTSML 560 
WD40-rpts                                                                                      

Query      561 GTSILLKEGKDVFCGHFEPPSERTVAFAELGHPFDGYIKMTQYTKSNWESGFPTEIYYSLKYMNQIDPTVNPVYFLLQKM 640 
WD40-rpts                                                                                      

Query      641 AKKDENALEYPHKVFKFILQIQESVTWDIVSDQNLTCSSAVIFNPLQVDESECTSQRYEFCPIGSASNRSKPLLMHARWH 720 
WD40-rpts                                                                                      

Query      721 LTAQGFPLSGPYSVIGKTLRLQSIKNPNQIGCYPVKKVSEATFRWVVYTNTSLSTVQQKISDKAGVPSFKVEVDYTRELY 800 
WD40-rpts                                                                                      

Query      801 QTRCTIFRITILENDEKLEQILDSFDVEARKFINDTELVCSETQPLTVDATNAISQNIITSSTSSLIFSIPLPISLLFIL 880 
WD40-rpts                                                                                      

Query      881 LARCFL 886 
WD40-rpts            

1 WD40-repeats found in QUERY=F47G3.1 (Len=886):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   318-384      3.01  238.81  0.03702       17.5%     26.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  318-384    MLKSLVLNNSCNALRPQFARPAAIANFIHPVIGRIVLVDTDDKILLTGEIRNIFDEMSTRATVLISN

   WD40 Template    TGE----------CLRTLSG--------HTSGVTSVSFSPDGKRLVS---------GSEDGTIKVWD