Input parameters:

  Query = F46C5.9 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F46C5.9, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIDIDSVSLPILIGGLVGFVTVMGVAIIYVAKKEQQGEQEEVDVVMDEVTETIISEEPVKKNKHQRTNDQWKAKEPTFVH 80  
WD40-rpts      (_________________________________WD 1_________________________________)        

Query       81 PWNVSVLKGHKKEVTDVAFASDGKKFVSISGDRSVILWDVRDFENKEHKCIRQTVEYDTPTRVVFAPDCKSVVFSVKREN 160 
WD40-rpts      (_________________WD 2________________)       (_________________WD 3____________

Query      161 KICVYKLVKKTEGSGSHHFVHIDNLEFERVHQVDIQNIGIAGNAKYLMSAALDNKICLYDLRGQLLQSIDAKVSSLYDCR 240 
WD40-rpts      _____)               (_________________WD 4________________)  (_________________

Query      241 LSPDGRFIIVSGFTPDVFVFEPIFTRDGTFQSAKKVFSLSGHQSGVLAAAFNNSSTRAVTVSRDGKWRIFDTDIRYEAGQ 320 
WD40-rpts      WD 5________________)           (_________________WD 6________________)         

Query      321 DSKILREGSWAPLHAATSEHVRLEMSPSGDSFAVSFKTDLKVFASEDETKDYPELKDICSTTISSIAYSSDGKYIATCGD 400 
WD40-rpts            (_________________WD 7_________________)   (________________WD 8__________

Query      401 KYVRVIRNVPEWHSRVVKLNRELPEITQEGARRRIKEQIDEAQELLKQFEK 451 
WD40-rpts      ______)                                            

8 WD40-repeats found in QUERY=F46C5.9 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-72       4.40  296.43  0.00629       12.5%     20.53
  WD 2:  Seg  6    81-119      9.88  522.90  5.6e-06       40.0%     47.11
  WD 3:  Seg  9   127-166      6.56  385.70  0.00039       25.0%     50.34
  WD 4:  Seg 13   182-220      8.80  478.36  2.2e-05       20.0%     47.09
  WD 5:  Seg 16   223-261      9.14  492.41  1.4e-05       20.0%     53.52
  WD 6:  Seg 20   273-311      9.28  497.80  1.2e-05       35.0%     56.48
  WD 7:  Seg 24   327-366      6.98  402.96  0.00023       20.0%     42.85
  WD 8:  Seg 26   370-407      6.66  389.97  0.00035       17.5%     46.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-72     MIDIDSVSLPILIGGLVGFVTVMGVAIIYVAKKEQQGEQEEVDVVMDEVTETIISEEPVK-KNKHQRTNDQWK
   WD 2   81-119    -PWNVSVLKGHKK-------EVTDVAFASDGK-------------------------KFV-SISGDRSVILWD
   WD 3  127-166    -EHKCIRQTVEYD-------TPTRVVFAPDCK-------------------------SVVFSVKRENKICVYK
   WD 4  182-220    -IDNLEFERVHQV-------DIQNIGIAGNAK-------------------------YLM-SAALDNKICLYD
   WD 5  223-261    -GQLLQSIDAKVS-------SLYDCRLSPDGR-------------------------FII-VSGFTPDVFVFE
   WD 6  273-311    -AKKVFSLSGHQS-------GVLAAAFNNSST-------------------------RAV-TVSRDGKWRIFD
   WD 7  327-366    -EGSWAPLHAATS-------EHVRLEMSPSGD-------------------------SFAVSFKTDLKVFASE
   WD 8  370-407    -KDYPELKDICST-------TISSIAYSSDGK-------------------------YIA-TCG-DKYVRVIR

   WD40 Template    TGECLRTLSGHTS-------GVTSVSFSPDGK-------------------------RLV-SGSEDGTIKVWD