Input parameters:

  Query = F46B6.8 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F46B6.8, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLFLAQITCLICTSFLLLQTINAHPDDDPELNMNTSQIIERWGYKAEVHTVTTEDGYILQMQRIPYGKTSVTWPNGKRPV 80  
WD40-rpts                                                                                      

Query       81 ILLQHGLLACASDWVDNLPTQSAAFVFADAGFDVWLGNVRGTTYGRKNTKLDPSETAFWQFSWDEMAQYDVPAMVDHVLA 160 
WD40-rpts                                                                                      

Query      161 MTGQENLYYMGHSQGTLIMFTHLAKDTDGSFAKKIKRYFALAPIGAVKNIKGFLSYFAHKFSPEFDGWYELFGSKDFLPD 240 
WD40-rpts       (__________________________________________________________________________WD 1

Query      241 NWITKMAAKDICGASEKEAELCDNELFLIGGPESDQWNASRTAIYSSQDPAGTSTQNIVHWMQMVRNGRVPAFDWGKKIN 320 
WD40-rpts      _________________________________________________________________________)      

Query      321 KKKYGQDTPPEYDFGAIKGTKIHLYWSDDDWLGDPTDIHDFLLKELNPAVIAENVNLKEYNHLDFTWGLNATFQIYDKAI 400 
WD40-rpts                                                                                      

Query      401 KTCTDDYLGKL 411 
WD40-rpts                 

1 WD40-repeats found in QUERY=F46B6.8 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   162-314      3.19  246.36  0.02940       35.0%     -1.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  162-314    TGQENLYYMGHSQGTLIMFTHLAKDTDGSFAKKIKRYFALAPIGAVKNIKGFLSYFAHKFSPEFDGWYELFGSKDFLPDNWITKMAAKDICGASEKEAELCDNELFLIGGPESDQWNASRTAIYSSQDPAGTSTQNIVHWMQMVRNGRVPAFD

   WD40 Template    TGECLRTLSGHT--------------SG-----------------VTSVS-------------------------FSPD------------GKR----------------LVSGSED-------------GT----------------IKVWD