Input parameters:

  Query = F45F2.10 (Len=980)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F45F2.10, Len=980):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPKDKKSKQKKEGSSGQEVEIVIKRKNSIVDSSGGSSSSSSETSGSSSDQSSQSGDSDGSIGFEHEKGTMTGGDNVQGSS 80  
WD40-rpts                                  (________________WD 1_______________)               

Query       81 SSHPDLGNNCSVRIRDRTEEMRKLMDENAKNRPVRIVDNVHGVPITEFTHIVPISDQERDDGPSTSGSYPNREPAQPSCS 160 
WD40-rpts                                                                                      

Query      161 SSKQNGKTAKNNFKQKQLTKKQRKELERKEFEISGAPAPIYPGQKERTKNPIEYVVEKERNNLHVHHFNEWSGDNVRDGE 240 
WD40-rpts                                                             (______________________WD

Query      241 MVVRGTNAAAQSMLGQDTVAIPYLRHEDELGPPMHYTDLHKNSQMRYLRNVNTIGNYTGLPAALKPLHRMGYGIAASGIP 320 
WD40-rpts       2______________________)                                                       

Query      321 DPEPHTLTINGAKPFMKYQYTDYVKSGAKIINWRSDFVSNADMDQTSQDETYVAIMMDHKKALENMIENTDDEFQKNMII 400 
WD40-rpts                                                                                      

Query      401 ALRDLDLRQVLLRFGEIERIIVRRKQNYVFSDCFPRFDSLSRQARITYVVTQTLDWSTNLFLEKFEDDVTEERACSILMH 480 
WD40-rpts                                                                                      

Query      481 LASTCPGEKPCYEDKHRKCSILHFLIHTTANKNIHLSHKFSGGNTLLHFAAMTGSPCQVDVLLRNGAPLNELNDLHKSPV 560 
WD40-rpts                                                                                      

Query      561 ALAIRRHTSLIARQLMWHGADIGGSLSLNHVQPRTPRQAANKELSEYHDYQAKSISYKAREFINQRLRALNNSFVSWVEA 640 
WD40-rpts                                                                                      

Query      641 IIIDADGRVKLGVHSVKSGLHQVRIGQDILDRLVVVQNRTFVKKSFQMVIERSEFEEEPVVLFLIPCQYNRFDTTMPANF 720 
WD40-rpts                                                                                      

Query      721 PHIVRVPMVTDALATAERIAAKEKKRIASGGVRVEYKDDLKGCRPIKLLGESVSISFGDGNVDRREILEPFFSFEHNGII 800 
WD40-rpts                                                                                      

Query      801 YAYNLPPIISNNLETKSKQVNVTVNLTIPETEGNRFKDCFFMVQAVQIVVREQPQPINPAFESSPNSFNLRPRDPRTDMI 880 
WD40-rpts                                                                                      

Query      881 AEKVARMRTEKVIEEAARRNEVEMRDNRVRGIVADIESAIALKKSKSVRGEATTSVSSSNSASSSSQVYVKDKTVVHRFP 960 
WD40-rpts                                                                                      

Query      961 SNSMKDFDKPPVSSNKTKTD 980 
WD40-rpts                          

2 WD40-repeats found in QUERY=F45F2.10 (Len=980):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    29-65       2.84  232.06  0.04546       22.5%     -13.66
  WD 2:  Seg  5   216-265      3.93  276.91  0.01149       20.0%      0.73

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-65     ---IVDSSGGSSSSSSETSGSSSDQSSQSGD----------SDGSIGFEH
   WD 2  216-265    VEKERNNLHVHHFNEWSGDNVRDGEMVVRGTNAAAQSMLGQDTVAIPYLR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS----------EDGTIKVWD