Input parameters:

  Query = F42G9.5a (Len=687)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F42G9.5a, Len=687):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLKPGDVVFYSRGTESTDFCDAVEKVVPDNTYYHVAIVSERGTIVEATGDGVLEYSLQKSIEENRPGCLEILEVANCCEK 80  
WD40-rpts                                                                                      

Query       81 VLEAAATWSWTKLGLPYNDLFAADLINSDGKESYYCSQLITAAFEFAGVDMKWPAHTLNFNDKNVNQISFWNEYFEKRGK 160 
WD40-rpts                                                                                      

Query      161 SQVPQGEEGSHPAQLRRSPRLLLKMRIFPNLINLNSLTETKLLELSSHFVAGNHVEFPSDRKFEVIEPRSGKPMATWHYA 240 
WD40-rpts                                                                                      

Query      241 TRDQVDLTVKEAKKAQKQWAKSSWMERSEILKKTGDLLKTHCNDIAYWECISNGKPIAEAKADVLSCVDTFYFYSGIASD 320 
WD40-rpts                                                                                      

Query      321 LLGQHVPLDASRYAYTRRLPVGVVAAIGAWNYPIQTCSWKTAPALACGNAVIYKPSPLSPVTALILAEILKSAGLPDGVF 400 
WD40-rpts                                                                              (_______

Query      401 NVIQGDAETAQDLIHHDGVSKVSFTGSIPTGKKIMKACADRNIKPVTLELGGKSALIVFDDADIDSAVSCAMMANFYSQG 480 
WD40-rpts      _________________________WD 1_______________________________)                   

Query      481 QVCSNASKVLVHKSVLKEFTKKLVDHTQKMKIGDPLKEDTQVGSHISAEHRNKVEGYISTAIAEGATKLCGGDRVAVHGL 560 
WD40-rpts                                                                                      

Query      561 ENGFYLSPCILTGITPKMTVYREEIFGSVLLIIPFDTEDEAIKIANDTDMGLAAGLVTKDLSRSYRVSEQLNAGNVYVNT 640 
WD40-rpts                                                                                      

Query      641 YNDVSPLVPFGGVGESGFGRENGTAVLEHYTHLKSVFVNTGTCPNPF 687 
WD40-rpts                                                     

1 WD40-repeats found in QUERY=F42G9.5a (Len=687):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   393-461      2.83  231.71  0.04594       27.5%     22.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  393-461    AGLPDGVFNVIQGDAETAQDLIHHDGVSKVSFTGSIPTGKKIMKACADRNIKPVTLELGGKSALIVFDD

   WD40 Template    TGE---CLRTLSGHT---------SGVTSVSFSPDG-----------------KRLVSGSEDGTIKVWD