Input parameters:

  Query = F41E6.5b (Len=371)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F41E6.5b, Len=371):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTPPALLTLDDYRKFSEKNLVKLARDYYESGAEQEESLRRNISAFNNLLIRPRCLRSVENIDTSIDWLNGKKSVFPVGIA 80  
WD40-rpts                                                                                      

Query       81 PTAFQKMATLDGELSTVRGAAASNSIMICSSWSTTSVEDIGKEAKIVGATIWFQLYVYKDRAITESLIHRAEAAGVEALV 160 
WD40-rpts                                                                                      

Query      161 LTVDTPVLGRRLKDTYNKFSLPKHLKFANFESNTQAEMPKGHVGESGFMQYVSSQIDPSLDWNTLKWIRTKTNLPVIVKG 240 
WD40-rpts                                                                             (________

Query      241 VMRGDDALLALEAGVDGIIVSNHGGRQMDCTVATIESLPEVLRAVDNRIPVWMDGGVRNGRDILKAVALGARGVFVGRPV 320 
WD40-rpts      ____________________WD 1____________________________)                           

Query      321 LWGLATSGSAGVSAVLGLLQSEFYHALQLSGFRSIKELQNDKHAIVHCSKL 371 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=F41E6.5b (Len=371):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   232-293      3.18  246.04  0.02969       25.0%     23.04

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  232-293    TNLPVIVKGVMRGDDALLALEAGVDGIIVSNHGGRQMDCTVATIESLPEVLRAVDNRIPVWM

   WD40 Template    TGECLRTLSGHT---------SGVTSVSFSPDGKRLVSGSE-------------DGTIKVWD