Accession: F41E6.13b - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = F41E6.13b (Len=394)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F41E6.13b, Len=394):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSATTSEENPDSINYIGFNQDSKVICVGHKDGYMFYKTADILENNTLTYEGENLTHLGLNNCLIIERLFSSALMVVISQK 80  
WD40-rpts      (________________WD 1_______________)            (_________________WD 2_________

Query       81 DPRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMKMMHNIMDTPTNKLGVLDLTSNPGNALIA 160 
WD40-rpts      ________)  (_________________WD 3________________)   (__________________WD 4____

Query      161 YPGSTDTGSVHLFDAINLSSVSTFNAHEGTIACLKFNQEGNMIATASTKGTVIRVYSVPNGHRLFEFRRGVTRCVNIYSL 240 
WD40-rpts      _____________)   (_________________WD 5_________________)(____________________WD

Query      241 CFSSDSKYLTSSSNTETVHVFKLEKTEGVDNKPEASTEGGGWFDAINKTFSAYMPSQVLQVGELMTTERSFATAKLPGAA 320 
WD40-rpts       6___________________)(__________________WD 7_________________)       (_________

Query      321 RSNQVSLVSHKNQQYVMAATSDGFVYAYRLDPEGGELDLIKQHNIGPKSDTSRASPTSTGSGGAAKSAEASISV 394 
WD40-rpts      ________WD 8________________)

8 WD40-repeats found in QUERY=F41E6.13b (Len=394):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.95  360.63  0.00086       17.5%     41.38
  WD 2:  Seg  5    50-89       9.12  491.56  1.5e-05       20.0%     44.76
  WD 3:  Seg  9    92-130      3.64  265.19  0.01649       10.0%     23.98
  WD 4:  Seg 13   134-174      6.04  364.12  0.00077       12.5%     45.09
  WD 5:  Seg 17   178-217      8.01  445.42  6.2e-05       22.5%     56.36
  WD 6:  Seg 21   218-262      7.18  411.39  0.00018       27.5%     45.45
  WD 7:  Seg 25   263-303      5.00  321.36  0.00290       10.0%     18.38
  WD 8:  Seg 27   311-349      7.06  406.16  0.00021       10.0%     53.71

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --MS-----AT-TSEENPDSINYIGFNQDSKVICVGHKD--G--YMFYK
   WD 2   50-89     EGEN-----LT-HLGLNNCLIIERLFSSALMVVISQKDP--RV-LHVYH
   WD 3   92-130    -SRN-----II-CDHRFNKSVLTVRLNRDRIVVCLEDCI--YI-YNLKD
   WD 4  134-174    -MHN-----IM-DTPTNKLGVLDLTSNPGNALIAYPGSTDTGS-VHLFD
   WD 5  178-217    -LSS-----VS-TFNAHEGTIACLKFNQEGNMIATASTK--GTVIRVYS
   WD 6  218-262    VPNGHRLFEFR-RGVTRCVNIYSLCFSSDSKYLTSSSNT--ET-VHVFK
   WD 7  263-303    LEKT-----EGVDNKPEASTEGGGWFDAINKTFSAYMPS--QV-LQVGE
   WD 8  311-349    -FAT-----AK-LPGAARSNQVSLVSHKNQQYVMAATSD--GF-VYAYR

   WD40 Template    TGEC-----LR-TLSGHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD