Input parameters:

  Query = F41E6.13a (Len=412)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F41E6.13a, Len=412):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSATTSEENPDSINYIGFNQDSKVICVGHKDGYMFYKTADILENNTLTYEGENLTHLGLNNCLIIERLFSSALMVVISQK 80  
WD40-rpts      (________________WD 1_______________)            (_________________WD 2_________

Query       81 DPRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMKMMHNIMDTPTNKLGVLDLTSNPGNALIA 160 
WD40-rpts      ________)  (_________________WD 3________________)   (__________________WD 4____

Query      161 YPGSTDTGSVHLFDAINLSSVSTFNAHEGTIACLKFNQEGNMIATASTKGTVIRVYSVPNGHRLFEFRRGVTRCVNIYSL 240 
WD40-rpts      _____________)   (_________________WD 5_________________)(____________________WD

Query      241 CFSSDSKYLTSSSNTETVHVFKLEKTEGVDNKPEASTEGGGWFDAINKTFSAYMPSQVLQVGELMTTERSFATAKLPGAA 320 
WD40-rpts       6___________________)   (________________WD 7________________)      (__________

Query      321 RSNQVSLVSHKNQQYVMAATSDGFVYAYRLDPEGGELDLIKQHNIGPKSDTSRASPTSTGSGGAAKSAEASNQSVPNMDD 400 
WD40-rpts      _______WD 8_________________)                                                   

Query      401 PDDFPPMSHTSG 412 
WD40-rpts                  

8 WD40-repeats found in QUERY=F41E6.13a (Len=412):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.95  360.55  0.00086       17.5%     41.92
  WD 2:  Seg  5    50-89       9.11  491.06  1.5e-05       20.0%     44.12
  WD 3:  Seg  9    92-130      4.10  284.12  0.00920       10.0%     23.24
  WD 4:  Seg 13   134-174      6.04  364.05  0.00077       12.5%     44.97
  WD 5:  Seg 17   178-217      7.93  442.13  6.8e-05       22.5%     55.87
  WD 6:  Seg 21   218-262      7.00  403.80  0.00022       27.5%     45.99
  WD 7:  Seg 25   266-303      4.72  309.69  0.00417       10.0%     14.96
  WD 8:  Seg 28   310-349      8.67  473.01  2.6e-05       10.0%     54.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --MS-----ATTSEENPDSINYIGFNQDSKVICVGHKD--G--YMFYK
   WD 2   50-89     EGEN-----LTHLGLNNCLIIERLFSSALMVVISQKDP--RV-LHVYH
   WD 3   92-130    -SRN-----IICDHRFNKSVLTVRLNRDRIVVCLEDCI--YI-YNLKD
   WD 4  134-174    -MHN-----IMDTPTNKLGVLDLTSNPGNALIAYPGSTDTGS-VHLFD
   WD 5  178-217    -LSS-----VSTFNAHEGTIACLKFNQEGNMIATASTK--GTVIRVYS
   WD 6  218-262    VPNGHRLFEFRRGVTRCVNIYSLCFSSDSKYLTSSSNT--ET-VHVFK
   WD 7  266-303    -TEG-----VDNKPEAST-EGGGWFDAINKTFSAYMPS--QV-LQVGE
   WD 8  310-349    SFAT-----AKLPGAARSNQVSLVSHKNQQYVMAATSD--GF-VYAYR

   WD40 Template    TGEC-----LRTLSGHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD