Input parameters:

  Query = F38G1.1 (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F38G1.1, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKLSASRKTRHTEMVCGVGWIGTEAILSAADDHVFLLTNTATNESQQILNMPETFFPTSLHIFPRSQTKGGQNDVFAV 80  
WD40-rpts        (_________________WD 1________________)          (_________________WD 2_______

Query       81 STSDGKINILSRNGKVENMVDAHNGAALCARWNSDGTGLLSSGEDGFVKMWSRSGMLRSVLAQFATAVYCVAWDSTSSNV 160 
WD40-rpts      __________)  (_________________WD 3________________)  (_________________WD 4____

Query      161 LYCNADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTGGEDLKFKVWDGFGQILFNSSVHDYPITSISWNTDGT 240 
WD40-rpts      ____________)  (_________________WD 5________________)  (________________WD 6___

Query      241 LFAVGSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLAVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRD 320 
WD40-rpts      _____________)  (_________________WD 7________________) (___________________WD 8

Query      321 VSSEVSRETLETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEKIFLVSDGMTITIFTYEG 400 
WD40-rpts      ___________________)                    (________________WD 9_______________)   

Query      401 RKLINLNPPGQVMALLDERKIDLANDTLVVRDRADNKVLHFFDPTTGKAQGDGNLKHEHDIVELTVNQCGPLNDRNVAFR 480 
WD40-rpts           (________________WD10________________)     (__________________WD11_________

Query      481 DQIGAVHIAMVKTFGVSQRMVKIGSLVEQLVFNDVTNMLCGISEGKIAVWPLPNVAFHDRNLLQKSLIQKNIGSVGKFPQ 560 
WD40-rpts      _________)   (________________WD12________________)                             

Query      561 LANFAGNTIVIRKSDGCLLPTGILPFYGTLITMASQSKWDQAIRLCRSIGNDTMWATFAGLAVLHKNMIVMEIAYAALED 640 
WD40-rpts                                                                                      

Query      641 DEKVSLINEIKDKTDKETRQAMQVVLTGKLADADVLLERSGLSFRSLMLNIQMFKWKRALELGLKNKQWLEIVMGYREKY 720 
WD40-rpts                                                                                      

Query      721 LKNCGQKETDPLFLKHMSEVEIDWVHIRELIAAEKAKGNN 760 
WD40-rpts                                              

12 WD40-repeats found in QUERY=F38G1.1 (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       5.83  355.66  0.00100       15.0%     46.18
  WD 2:  Seg  5    52-91       4.58  303.69  0.00502       10.0%     16.67
  WD 3:  Seg  8    94-132      9.05  488.70  1.6e-05       27.5%     54.91
  WD 4:  Seg 12   135-173      5.39  337.19  0.00178       12.5%     52.96
  WD 5:  Seg 16   176-214      8.47  464.57  3.4e-05       25.0%     52.39
  WD 6:  Seg 20   217-254      6.99  403.46  0.00023       30.0%     54.52
  WD 7:  Seg 24   257-295      7.50  424.41  0.00012       25.0%     55.58
  WD 8:  Seg 28   297-340      3.22  247.83  0.02811       10.0%     46.23
  WD 9:  Seg 34   361-397      4.33  293.55  0.00687       12.5%     37.98
  WD10:  Seg 39   406-443      4.45  298.38  0.00592        5.0%     36.95
  WD11:  Seg 43   449-490      4.13  285.41  0.00884        7.5%     44.01
  WD12:  Seg 46   494-531      5.41  338.17  0.00172       22.5%     48.18

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     LKLSAS----RKTRHTEMVCGVGWIGTE----A-ILSAADDHVFLLTN
   WD 2   52-91     NMPETF----FPTSLHIFPRSQTKGGQN----DVFAVSTSDGKINILS
   WD 3   94-132    -GKVEN----MVDAHNGAALCARWNSDG----TGLLSSGEDGFVKMWS
   WD 4  135-173    -GMLRS----VLAQFATAVYCVAWDSTS----SNVLYCNADHCYIKSL
   WD 5  176-214    -QVAPI----KWKAHDGIILCCDWNPTS----DLIVTGGEDLKFKVWD
   WD 6  217-254    -GQILF----NSSVHDYPITSISWNTDG----TLFAVGSHN-ILRLCD
   WD 7  257-295    -GWSHS----LEKMNAGSVMALSWSPDG----TQLAVGTAAGLVFHAH
   WD 8  297-340    IDKRLTYEEFEIVQTQKTVIEVRDVSSE----VSRETLETKERISKIA
   WD 9  361-397    NWN-------TPTMIEYNERTVNIIVQC----EKIFLVSDGMTITIFT
   WD10  406-443    LNPPGQ----VM--ALLDERKIDLANDT----LVVRDRADNKVLHFFD
   WD11  449-490    AQGDGN----L--KHEHDIVELTVNQCGPLNDRNVAFRDQIGAVHIAM
   WD12  494-531    -FGVSQ----RMVKIGSLVEQLVFNDVT----NMLC-GISEGKIAVWP

   WD40 Template    TGECLR----TLSGHTSGVTSVSFSPDG----KRLVSGSEDGTIKVWD