Input parameters:

  Query = F38A6.2b (Len=888)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F38A6.2b, Len=888):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFTVPGFCSLRSQVQTQQPRGANFYELILNENDRLKFRVDELEKIVVAQRNEILLLQSSTVEILRRLQNLEIQDQSRSPT 80  
WD40-rpts                                                                               (______

Query       81 CSGYSSLPRRISGSKSSYTMSPSHAPPRSSHANSKSLYINGMNNNSEEVSPGPPRHRPPTRGSDGMVNVSVGKSARGSPM 160 
WD40-rpts      ___________WD 1_________________)                                               

Query      161 RKWVSTHDMKDTDRFRRLSTSSEASTSATMNPIVNSVRRLSTTHRQSSPSLLSLCSVISRSPSTSSILRKNNRTCQFSNG 240 
WD40-rpts                                                                                      

Query      241 SGHLPIFIGGKTVQVPVPTGYENMDPTMDQDPPTMKVTLKHVYSYRGKDVRSNIEMLPTGELVFFSANLVVLMNITGEDR 320 
WD40-rpts                                                                                    (_

Query      321 SQRIYHGHTCDVKCITLHPNKILVASGQSSCHSVEKFQKPEHTSPIDSPEDLVRQLEMEHTEAHVRIWDTIKLTTLMVLN 400 
WD40-rpts      _______________WD 2________________)   (____________WD 3____________)   (_______

Query      401 GFEKGICHVAFSKTDSGSLLAVVDDSLKHLMSVWNWQKGKREGEVKASNDVVFECKWHPTIRNLIVLYGKGHFSFFNYDP 480 
WD40-rpts      ____________WD 4__________________)   (_________________WD 5________________)   

Query      481 ATGVLVKTVATFEGRDKPKTVLSMCFGENDQVVTGDSNGTISIWDPRTCKTTKQAHSVHPGGVYSLTLAKSGKILSGGKD 560 
WD40-rpts        (___________________WD 6__________________)(__________________WD 7____________

Query      561 RMVSEWDLQDLVRTRRPIELPDEKGFPRVILQNGSELIIGTSSNTLLFGNIENSTNLTSLIEGDPGNLTFLLTCSSNQLI 640 
WD40-rpts      ______)    (_________________WD 8________________)   (_________________WD 9_____

Query      641 TSSQCGTLRIWNHIDKKVEFSKKFIDSVECVDVDVTNTHIILGFAAGLWIVMNITKQQTIQEKKEGTAPITAVKFAPSGA 720 
WD40-rpts      ___________)  (_________________WD10________________)   (_________________WD11__

Query      721 TFAVATKDPHLTIYRIDASKNLLVIARIHHIPAPIVALDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSR 800 
WD40-rpts      ______________)(____________________WD12___________________)                    

Query      801 VKIGFETALVAHSSNGQVTAVAQCEDISACGMENGTIRIYKNPVTSVTAGFVELLGHGRIIKSVAFSNKIQLFSCSPTDN 880 
WD40-rpts         (________________WD13________________)      (_________________WD14___________

Query      881 SVFEWCLE 888 
WD40-rpts      _____)  

14 WD40-repeats found in QUERY=F38A6.2b (Len=888):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    74-113      3.47  258.02  0.02056       15.0%     -7.72
  WD 2:  Seg 10   319-356      6.19  370.18  0.00064       22.5%     52.40
  WD 3:  Seg 14   360-389      3.11  243.22  0.03236       12.5%     29.06
  WD 4:  Seg 16   393-435      6.87  398.28  0.00027       27.5%     44.20
  WD 5:  Seg 20   439-477      5.70  350.21  0.00119       12.5%     55.89
  WD 6:  Seg 24   483-525      5.83  355.30  0.00101       30.0%     52.90
  WD 7:  Seg 28   526-567      7.04  405.59  0.00021       32.5%     49.24
  WD 8:  Seg 32   572-610      6.64  388.86  0.00036       12.5%     55.10
  WD 9:  Seg 36   614-652      7.93  442.30  6.8e-05       20.0%     52.14
  WD10:  Seg 40   655-693      6.70  391.25  0.00033       12.5%     56.42
  WD11:  Seg 44   697-735      8.15  451.42  5.1e-05       17.5%     58.58
  WD12:  Seg 48   736-780      7.26  414.63  0.00016       15.0%     55.98
  WD13:  Seg 54   804-841      7.01  404.26  0.00022       22.5%     50.93
  WD14:  Seg 58   848-886      7.33  417.33  0.00015       22.5%     52.82

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   74-113    DQS-----R---SPTCS-----GYSSLPRRISGSKSSYTM----SPSHAPPRSSHAN
   WD 2  319-356    -DR-----S---QRIYH-----GHTCDVKCITLHPNKILV----ASGQ-SSCHSVEK
   WD 3  360-389    -PE-----H---TSPID-----SPEDLV---------RQL----EMEHTEAHVRIWD
   WD 4  393-435    -LT-----T---LMVLN-----GFEKGICHVAFSKTDSGSLLAVVDDSLKHLMSVWN
   WD 5  439-477    -GK-----R---EGEVK-----ASNDVVFECKWHPTIRNL----IVLYGKGHFSFFN
   WD 6  483-525    -GV-----L---VKTVATFEGRDKPKTVLSMCFGENDQ-V----VTGDSNGTISIWD
   WD 7  526-567    PRT-----CKTTKQAHS-----VHPGGVYSLTLAKSGK-I----LSGGKDRMVSEWD
   WD 8  572-610    -VR-----T---RRPIE-----LPDEKGFPRVILQNGSEL----IIGTSSNTLLFGN
   WD 9  614-652    -ST-----N---LTSLI-----EGDPGNLTFLLTCSSNQL----ITSSQCGTLRIWN
   WD10  655-693    -DK-----K---VEFSK-----KFIDSVECVDVDVTNTHI----ILGFAAGLWIVMN
   WD11  697-735    -QQ-----T---IQEKK-----EGTAPITAVKFAPSGATF----AVATKDPHLTIYR
   WD12  736-780    IDASKNLLV---IARIH-----HIPAPIVALDFSSDSQYL----RGQSIGAHLLFWT
   WD13  804-841    GFE-----T-----ALV-----AHSSNGQVTAVAQCEDIS----ACGMENGTIRIYK
   WD14  848-886    -TA-----G---FVELL-----GHGRIIKSVAFSNKIQLF----SCSPTDNSVFEWC

   WD40 Template    TGE-----C---LRTLS-----GHTSGVTSVSFSPDGKRL----VSGSEDGTIKVWD