Input parameters:

  Query = F31E3.4 (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F31E3.4, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASATTNQGNEWRFVAPININTTTENTVSCVKFDPHEDLFWIGSSTGKVTSLLPTNHFTRYSAFVVSNISGVHSLEPTES 80  
WD40-rpts                         (______________WD 1______________)                           

Query       81 LIFTLSDTMLRATTRQGIPVAKFTSPSMTKMAASCHMPGTSTFIMGGFQEKLIHYDFVKEKEIRTTELKASENAIIIRYN 160 
WD40-rpts                    (__________________WD 2__________________)(__________________WD 3_

Query      161 GTNTFTADTRGNVFVKNSKNCETIHTLDCHQDQVLDFDVQGNKLITCGVSMNRLKNMDQFIKVYDLRMYKALSPIGMPYL 240 
WD40-rpts      ________________)(_____________________WD 4_____________________)               

Query      241 PQFARFMPSYCERVCVTYQTMYNQPGQTATWSNHPAGVKMFDLNSNGNSAEFPIETSLISAFDFSSNKNFIAVGNHCGIV 320 
WD40-rpts                                                   (_________________WD 5_____________

Query      321 NVFADRDQPQVNENSKETVFAAPPVQPPLSFAIDDTTQTFGSIPLGFSQEPLVSDWPTELTQIVYRRRKPPTEQTNVKSI 400 
WD40-rpts      ___)                                                                            

Query      401 HYLSQIKNPRINSKLKRHNIVPYFFEQEELIEASNDHGSKEEAPQEMKRIKVSKLYKKRPLIVNQVPARRGNSQDETQET 480 
WD40-rpts                                                                                      

Query      481 YTWNIIRHVTMQSTHGMNLVANTLVQVAYSLSPIRSIVLRHICTEDSCITCELHFLFTAFSSKIGDNSGMLTNNLAWALA 560 
WD40-rpts                                                                                      

Query      561 RNGVSLKAGGVLSATQQIIKTVIDDVARTDASGSICSKFDRHLRCIRCRGLQQQESVTDHLLKLNYAPVYQASLCQLIEK 640 
WD40-rpts                                                                                      

Query      641 SLHIGDDSGEIECEDCKQMSRMECKRKVRELSPVLLIDTNASSNGFVEFWRRQLSLFERKPGGNRSSALGTVPESPSEKK 720 
WD40-rpts                                                                                      

Query      721 NCRFGTDCRNKKTCKFVHGLVDWPAEQTKLLEDVDLPEWAHYIPSRIAAQLCEGIVRLSDVSDLPDYDEPSAVIYELDAM 800 
WD40-rpts                                                                                      

Query      801 IHAVGNGENDVNWTHPVTLLRESPVISSSWTLINEQLVSRLHDHEARHIDGRWKLPALLAYKKKNFDVKTSEDIISNDLF 880 
WD40-rpts                                                                                      

Query      881 LAEENLASNGMTSLAVQSLEELPKEKELVGLDAEFIKIKTDLLEFDGKTVQMRAVGRASCVDSTGERIIFDDHVKLTDDV 960 
WD40-rpts                                                                                      

Query      961 EVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVLIQRGVTFVGHALHNDFTVLNVHVAESQIIDTVTLMRLGTQR 1040
WD40-rpts                                                                                      

Query     1041 MLSLQFLVKEILGETIQMEAHDSVVDARYALKLYRKYLEIKEQGLLGSEMRRIYTILPCPSPNQTSSPLVVSTTRKTPED 1120
WD40-rpts                                                                                      

Query     1121 TNPADAAPKSV 1131
WD40-rpts                 

5 WD40-repeats found in QUERY=F31E3.4 (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-53       3.00  238.77  0.03706       17.5%     35.32
  WD 2:  Seg  9    95-136      3.00  238.45  0.03742       10.0%     50.26
  WD 3:  Seg 13   137-177      2.83  231.49  0.04624        7.5%     46.30
  WD 4:  Seg 17   178-225      3.38  254.15  0.02316       22.5%     35.73
  WD 5:  Seg 24   286-324      4.64  306.15  0.00465       17.5%     38.95

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-53     --------INTTT-ENTVSCVKFDPHEDLFWI--------GSSTGKVTSLL
   WD 2   95-136    RQGIPVAKFTSPS-MTKMAASCHMPGTSTFIM--------GGFQEKLIHYD
   WD 3  137-177    FV--KEKEIRTTELKASENAIIIRYNGTNTFT--------ADTRGNVFVKN
   WD 4  178-225    SK--NCETIHTLD-CHQDQVLDFDVQGNKLITCGVSMNRLKNMDQFIKVYD
   WD 5  286-324    -N--GNSAEFPIE-TSLISAFDFSSNKNFIAV--------GNHCGIVNVFA

   WD40 Template    TG--ECLRTLSGH-TSGVTSVSFSPDGKRLVS--------GSEDGTIKVWD