Input parameters:

  Query = F26E4.1 (Len=495)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F26E4.1, Len=495):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVMEVDEPAVAATTSQNQPQEHANDFDMDTSEGPIENDETFEPVDQINWKFNQVKGNIDADVHTEADVISCVEFSHDGEY 80  
WD40-rpts            (_________________WD 1_________________)        (_________________WD 2____

Query       81 LATGDKGGRVVIFQRDQSGKYVKGVRSREYNVYSTFQSHEPEFDYLKSLEIDEKINQIRWLKKKNAANFILSTNDKTIKL 160 
WD40-rpts      _____________)                       (____________________WD 3__________________

Query      161 WKISERERKIGDDAWNLPRTNRINTSSFRGRLQIPSIVPMELIVEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRV 240 
WD40-rpts      _)                                           (_________________WD 4_____________

Query      241 NLWNLEITNESFNIVDIKPANMEELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEPEDPQSRSF 320 
WD40-rpts      ___)            (_________________WD 5________________)                   (_____

Query      321 FSEIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSIFDKFECDWSGDDKHILTG 400 
WD40-rpts      ___________WD 6________________)           (_____________________WD 7___________

Query      401 SYHNLFRSYARGNNQDAKTWEARPQEPHSQLRSRFVVPSAKRKRNNLSSSGETTEEDLSSDQLQFDRKILHTAWHPKDNI 480 
WD40-rpts      _________)   (_________________WD 8________________)                            

Query      481 IALAATNNLYIFSDV 495 
WD40-rpts                     

8 WD40-repeats found in QUERY=F26E4.1 (Len=495):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       7.52  425.42  0.00011       12.5%     21.87
  WD 2:  Seg  5    55-94      10.12  532.54  4.1e-06       22.5%     48.93
  WD 3:  Seg  9   118-162      4.45  298.47  0.00590       15.0%     48.72
  WD 4:  Seg 16   206-244      7.89  440.76  7.1e-05       22.5%     51.20
  WD 5:  Seg 21   257-295      6.31  375.29  0.00054       22.5%     37.75
  WD 6:  Seg 25   315-352      6.69  391.08  0.00033       30.0%     38.40
  WD 7:  Seg 29   364-410      5.37  336.46  0.00182       15.0%     45.77
  WD 8:  Seg 32   414-452      5.70  349.93  0.00120        7.5%     -1.25

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     EPA-------V---AATTSQNQPQEHANDFDM--DTSEGPIENDETFEPVDQ
   WD 2   55-94     KGN-------I---DADVHTEADVISCVEFSH--DGEYLATGDKGGRVVIFQ
   WD 3  118-162    SHE-------PEFDYLKSLEIDEKINQIRWLKKKNAANFILSTNDKTIKLWK
   WD 4  206-244    ASP-------R---RVYGNAHTYHVNSISVNS--DQETFLSAD-DLRVNLWN
   WD 5  257-295    IKP------------ANMEELTEVITAAEFHP-TQCNWFVYSSSKGSIRLCD
   WD 6  315-352    -PQ-------S---RSFFSEIIASVSDVKFSH--NGRYLLT-RDYLTVKVWD
   WD 7  364-410    PVHNYLRTKLC---ALYENDSIFDKFECDWSG--DDKHILTGSYHNLFRSYA
   WD 8  414-452    -NQ-------D---AKTWEARPQEPHSQLRSR--FVVPSAKRKRNNLSSSGE

   WD40 Template    TGE-------C---LRTLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD