Input parameters:

  Query = F25D1.1c (Len=385)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F25D1.1c, Len=385):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEH 80  
WD40-rpts                                                                                      

Query       81 LISSEEFREMTKTLEENNGVLTDSTLKLLEKGIKKGFLSFDEISKTSNDISKSGCTAVCAIVTPTHFIIGNLGDSRAVVA 160 
WD40-rpts                                                                             (________

Query      161 GKNEIFGTEDHKPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGDYEYKDDPRLPADQQLVSPEPDVYIRERNLENDQF 240 
WD40-rpts      _________________WD 1________________________)                                  

Query      241 MVVACDGIYDVMTNEELAEFVKDRLSVHSDLREVCDDVLDECLVKGSRDNMTMVVVCFPAAPEVNIHRKEAEEAWVSRVK 320 
WD40-rpts                                                                                      

Query      321 TVINQFLDEAVAAEDFKQEEDMVTLKSILDKVTANGLLPTDLRVPEHTVTTLAQKILTQRDIKHV 385 
WD40-rpts                                                                       

1 WD40-repeats found in QUERY=F25D1.1c (Len=385):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   152-206      2.91  234.95  0.04163       15.0%     14.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  152-206    LGDSRAVVAGKNEIFGTEDHKPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------KRLVSGSEDGTIKV----WD