Input parameters:

  Query = F25D1.1b (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F25D1.1b, Len=367):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKEIYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLISSEEFREMTKTLEENN 80  
WD40-rpts                                                                                      

Query       81 GVLTDSTLKLLEKGIKKGFLSFDEISKTSNDISKSGCTAVCAIVTPTHFIIGNLGDSRAVVAGKNEIFGTEDHKPYLEKE 160 
WD40-rpts                                                           (_________________________W

Query      161 RKRIEGAGGSVMIQRINGSLAVSRAFGDYEYKDDPRLPADQQLVSPEPDVYIRERNLENDQFMVVACDGIYDVMTNEELA 240 
WD40-rpts      D 1________________________)                                                    

Query      241 EFVKDRLSVHSDLREVCDDVLDECLVKGSRDNMTMVVVCFPAAPEVNIHRKEAEEAWVSRVKTVINQFLDEAVAAEDFKQ 320 
WD40-rpts                                                                                      

Query      321 EEDMVTLKSILDKVTANGLLPTDLRVPEHTVTTLAQKILTQRDIKHV 367 
WD40-rpts                                                     

1 WD40-repeats found in QUERY=F25D1.1b (Len=367):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   134-188      2.92  235.24  0.04126       15.0%     12.12

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  134-188    LGDSRAVVAGKNEIFGTEDHKPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------KRLVSGSEDGTIKV----WD