Input parameters:

  Query = F25D1.1a (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F25D1.1a, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTISRADLQIASSAEPKTHGNLNESFAPEIRQTASTIASLSIFGTPSDQECQPIPVVPRSSSSDELRVWRVTSAGLVEVD 80  
WD40-rpts                                                                                      

Query       81 AKTMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQL 160 
WD40-rpts                                                                                      

Query      161 LEHLISSEEFREMTKTLEENNGVLTDSTLKLLEKGIKKGFLSFDEISKTSNDISKSGCTAVCAIVTPTHFIIGNLGDSRA 240 
WD40-rpts                                                                                (_____

Query      241 VVAGKNEIFGTEDHKPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGDYEYKDDPRLPADQQLVSPEPDVYIRERNLEN 320 
WD40-rpts      ____________________WD 1________________________)                               

Query      321 DQFMVVACDGIYDVMTNEELAEFVKDRLSVHSDLREVCDDVLDECLVKGSRDNMTMVVVCFPAAPEVNIHRKEAEEAWVS 400 
WD40-rpts                                                                                      

Query      401 RVKTVINQFLDEAVAAEDFKQEEDMVTLKSILDKVTANGLLPTDLRVPEHTVTTLAQKILTQRDIKHV 468 
WD40-rpts                                                                          

1 WD40-repeats found in QUERY=F25D1.1a (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   235-289      2.80  230.13  0.04819       12.5%     15.42

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  235-289    LGDSRAVVAGKNEIFGTEDHKPYLEKERKRIEGAGGSVMIQRINGSLAVSRAFGD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------KRLVSGSEDGTIK----VWD