Input parameters:

  Query = F25B5.2 (Len=757)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F25B5.2, Len=757):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAPKKRKSDIHSDDRDHADHQTKKEKHWFEEKSEQNGENRRSSIFKGFLKKVKSSTTLKSTNKSASSSKMDTIANETHL 80  
WD40-rpts                                                                                      

Query       81 SITSESSITSVESCHSAQFPNVAKNAMLRTLVNRDSFTPVPPPDGESVTFILPEIGSSKLEFTSKMDDAISIESRMSIGS 160 
WD40-rpts                                                                                      

Query      161 CHTIDEDSASIGSTSVFCTPSRNPLMRNGLRMSTRSVPENQDDMPPALFRSLCNSAVRRVPTSKSEGGGTPMRRSMRMSI 240 
WD40-rpts                                                                                      

Query      241 QKRNLSSKNMEDVPEEEALTVSNSSIRVDAPIAEEDEEVFGAAKEYFDNNVTSHNDSADEGTCSMSRLSTTSERASGVGG 320 
WD40-rpts                                                                                      

Query      321 SSIGRRSSIFRKIFPGKSESKDRRMSDNNQASEQYMDKKSRRASVVSFNEFTSVSGLSVNDSASKNPKDLTESPQQPKLR 400 
WD40-rpts                                                                                      

Query      401 KKTASSSNLSQRISSVFRMGSNSTVKLNEYVPSPIVSQSSRRNTLTGNSSISSGVGSIASGTSDQGYGTIGSRSGQSISR 480 
WD40-rpts                                                                                      

Query      481 CGSRRDDEGKKERTRRLLDRIIISDVPAGELLKLKIEQVKKQKQLEMDELFETQLTESSSSDTSQSENLQFDVVAVDIKA 560 
WD40-rpts                                                                 (____________________

Query      561 DGSPFSTTAATFMDSELSKRVKEEIVSNYRPDRCGSITEYEPELVFVMPEQPQASLKSLNDSVSSNADINLDHLRNVRSG 640 
WD40-rpts      _______WD 1___________________________)                                         

Query      641 LCKSIEEWKRITKMRESSTMLIYPMFCQSEEEWDSKGTIDAIFLMLDGILMNTKRWMPNGKCILAGVTPNNVILLRNKFD 720 
WD40-rpts                                                                                      

Query      721 ELKLSVAISESDGPASSNDDFDTQSTASTSTVFGAKI 757 
WD40-rpts                                           

1 WD40-repeats found in QUERY=F25B5.2 (Len=757):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   540-599      3.26  249.35  0.02683       12.5%     11.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  540-599    SSDTSQSENLQFDVVAVDIKADGSPFSTTAATFMDSELSKRVKEEIVSNYRPDRCGSITE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGS----E-----------------DGTIKVWD