Input parameters:

  Query = F23B2.4 (Len=1192)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F23B2.4, Len=1192):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPNLLWVDKILDENNEAGVCIYDLAFKPDGSELLLAADNKVYLFDVNEGGQMQTLKGHKDLVYTVAWSHNGELFASGGA 80  
WD40-rpts                 (_______________WD 1______________)   (_________________WD 2_________

Query       81 DKLVILWNEKHEGTLRYSHTDVIQCMMFNPCNQILLTCALNEFGLWSTADKNVIKQRSVVRCCSCAWNTDGTIFAIGHGD 160 
WD40-rpts      _______)     (______________WD 3______________)(_________________WD 4___________

Query      161 GTITLRKGTNATEEPSIIIQRDNEPIWGIAFSSNRTFASRDSQGNPMGIDEIMAVIDWNKTLSFYSLDGTFIESKNLEFE 240 
WD40-rpts      ______)     (_________________WD 5________________)                (____________

Query      241 PHCISYCLNGEYLLIGGSDKILKIYTRKGVLLGTVAQMDHWIWSVTVRPNSQTVAMGCVDGTIACYNLVFSTVHCVDHAR 320 
WD40-rpts      _____WD 6________________)  (_________________WD 7________________)             

Query      321 YANRKSMTDVFVQNLEYRTSSNICCHDLVKKMSLYDTKLAVQLSDKIQIYKQTGGVSKNERRKQLKYTLQDTIRKDLSFS 400 
WD40-rpts                                                                                      

Query      401 LMVVTHGHLVVCNDEKLECYDFKGIKKRSWNMKSIVRYLRVLGGPAHRETLVLGTTDGGVYKVFIDNDYPILLDSRKTAI 480 
WD40-rpts                           (___________________WD 8__________________)  (_____________

Query      481 KCIDINANRTVLASIEDTLVCKWSDIATGETLLQEPGCYSVVFNTVNENLFAFTTNNMLHVRTLAAPGHTTRGVGYVLGF 560 
WD40-rpts      ____WD 9________________)(________________WD10________________)                 

Query      561 VKNRTFCLVQYNLIPLEVPYTIHLYQYIERGDFKEALRIACLGVVKNDWKYLANKALDALEFDVARKAYKRVRDRKMLRM 640 
WD40-rpts                                                                                      

Query      641 VWELKKMKSNGEPDAILRATILAYTKKFREAAKIFKENGFENRAMELFTDMRMFDDVQEVMTTASGETKKMLMRKRASWA 720 
WD40-rpts                                                                                      

Query      721 RDANQPKIAAEMLISSGDLDKAALLIIDNDWLELAIEISHKIDRSDLETMKKLSAYFIRKHEFGLASRIFQSINDMKSIV 800 
WD40-rpts                                                                                      

Query      801 DMHVNAGHWTDAFAIADRHPKYVEDVYLPYARFLAERDRFEEAQKAFHRAGKEQEAMHVLEQLTSNSVNENRFADAGFYY 880 
WD40-rpts                                                                                      

Query      881 WLLSQQYLDRSQTEENLTLLNKAKEAASLADAYYAYYPVFIFCSQPFSFERNENILNMARYLTFTPYIDNISKVFVYFTI 960 
WD40-rpts                                                                                      

Query      961 AKIANEMGAYKSARTALDQLTNLRVLPQFELDGQIEVMTLNIRAKPFTDVESMQPMCYRCGLNNPLLGGMSCIHCETPFI 1040
WD40-rpts                                                                                      

Query     1041 ISFVSFDILPLIEFKIENDISFDEAKELIESEPPLSDDDYNPLRGLKKGIKEIILNRESLSKLEQGHVIIQTFPPPLAPK 1120
WD40-rpts                                                                                      

Query     1121 FLFNVMPSITIAQCKGCNKVFDLDDFEMACLRKGHCPFCRTSYDRNEAFFVDEEEDEDNTNIPSFGQFSRFS 1192
WD40-rpts                                                                              

10 WD40-repeats found in QUERY=F23B2.4 (Len=1192):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-46       4.29  291.70  0.00728       20.0%     45.02
  WD 2:  Seg  4    50-88       8.62  470.57  2.8e-05       32.5%     54.65
  WD 3:  Seg  8    94-127      3.41  255.37  0.02230       17.5%     47.35
  WD 4:  Seg 11   128-167      6.41  379.61  0.00048       22.5%     54.62
  WD 5:  Seg 15   173-211      4.18  287.22  0.00836       10.0%     30.29
  WD 6:  Seg 20   228-266      4.95  319.17  0.00311       17.5%     44.70
  WD 7:  Seg 23   269-307      6.48  382.22  0.00044       27.5%     55.04
  WD 8:  Seg 37   422-464      3.24  248.46  0.02757       12.5%     52.91
  WD 9:  Seg 41   467-505      4.57  303.33  0.00508       12.5%     53.24
  WD10:  Seg 45   506-543      2.90  234.38  0.04236       15.0%     43.29

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-46     ----LD---ENNEAGVCIYDLAFKPDGSELLLAA-DNKVYLFD
   WD 2   50-88     -GGQMQ---TLKGHKDLVYTVAWSHNGELFASGGADKLVILWN
   WD 3   94-127    T--------LRYSHTDVIQCMMFNPCNQILLTCALN-EFGLWS
   WD 4  128-167    TADKNV---IKQRSVVRCCSCAWNTDGTIFAIGHGDGTITLRK
   WD 5  173-211    -EEPSI---IIQRDNEPIWGIAFSSNRTFASRDSQGNPMGIDE
   WD 6  228-266    DGTFIE---S-KNLEFEPHCISYCLNGEYLLIGGSDKILKIYT
   WD 7  269-307    -GVLLG---TVAQMDHWIWSVTVRPNSQTVAMGCVDGTIACYN
   WD 8  422-464    FKGIKKRSWNMKSIVRYLRVLGGPAHRETLVLGTTDGGVYKVF
   WD 9  467-505    -NDYPI---LLDSRKTAIKCIDINANRTVLASIEDTLVCKWSD
   WD10  506-543    IAT--G---ETLLQEPGCYSVVFNTVNENLFAFTTNNMLHVRT

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD