Input parameters:

  Query = F21C10.10 (Len=226)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F21C10.10, Len=226):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSIVVGSGVLAETVVGLLCAAGRRVSLVAPSGKVNALKFDSSVIKAILQEDSEKKIPFEFIDDIRQQQKLADKNFKKIN 80  
WD40-rpts                           (____________________________________________WD 1__________

Query       81 VTTDISKIEAADQIIDACSADESSLFINTAKAVPNATIISLNGEKSPIHSNHVSVKMYSPIHETKTAKMFTNSKVSKKTL 160 
WD40-rpts      __________________________________)                                             

Query      161 EEVNQLLDSMGLTVLSEEDSRVADRLVLDMQQVEKSSSLSKLISTLVTPLNAPATPSMPKEQYLLF 226 
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=F21C10.10 (Len=226):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    22-115      3.02  239.56  0.03618       22.5%     13.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-115    AGRRV-SLVAPSGKVNALKFDSSVIKAILQEDSEKKIPFEFIDDIRQQQKLADKNFKKINVTTDISKIEAADQIIDACSADESSLFINTAKAVPN

   WD40 Template    TGECLRTLSGHTSGVTSVSFS----------------PD-----------------GKRLVSGSE---------------DGTI-------KVWD